RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 NCALDP61601 193 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 E4F1Q66K89 784 aaPredicted RBP14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 MFN1Q8IWA4 741 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 PI4K2BQ8TCG2 481 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 TEKT3Q9BXF9 490 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 SPATA2Q9UM82 520 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 HPS5Q9UPZ3 1129 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 AKT3Q9Y243 479 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 PSMC2P35998 433 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 MICALL2Q8IY33 904 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 ATP8A2Q9NTI2 1148 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 PA2G4Q9UQ80 394 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 FAM83GA6ND36 823 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 CTTNQ14247 550 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 NME9Q86XW9 330 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 CARD9Q9H257 536 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 KLC4Q9NSK0 619 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 SCN3BQ9NY72 215 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 RGS5O15539 181 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 GADD45BO75293 160 aaPredicted RBP14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 UFL1O94874 794 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 EME1Q96AY2 570 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 GOLGA8SH3BPF8 625 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 PLEKHM2Q8IWE5 1019 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 DIS3Q9Y2L1 958 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 KDM5AP29375 1690 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 TRIM49P0CI25 452 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 TRIM49CP0CI26 452 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 CENPAP49450 140 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 DDI1Q8WTU0 396 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 STAMQ92783 540 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 PCDHA5Q9Y5H7 936 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 ZNF839A8K0R7 811 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 APOA4P06727 396 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 POTEAQ6S8J7 498 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 MYLK2Q9H1R3 596 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 DCTN4Q9UJW0 460 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 EMILIN1Q9Y6C2 1016 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 UBE4BO95155 1302 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 KRT40Q6A162 431 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 MDM1Q8TC05 714 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 THOC1Q96FV9 657 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 VIPAS39Q9H9C1 493 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 CYP26B1Q9NR63 512 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 SEPT9Q9UHD8 586 aaPredicted RBP14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 LOC102724159A0A0B4J2E5 919 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 OR52Z1P0C646 297 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 PWP2Q15269 919 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 MRPL1Q9BYD6 325 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 SLC39A2Q9NP94 309 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 ADAM30Q9UKF2 790 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 KCNJ14Q9UNX9 436 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 DDHD1Q8NEL9 900 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 LRFN2Q9ULH4 789 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 TARSL2A2RTX5 802 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 DNALI1O14645 258 aaPredicted RBP14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 MAP3K13O43283 966 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 CYP19A1P11511 503 aaPredicted RBP14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 SLC7A5Q01650 507 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 FAM45BPQ6NSW5 357 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 IKBIPQ70UQ0 350 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 BBS7Q8IWZ6 715 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 C19orf18Q8NEA5 215 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 SAYSD1Q9NPB0 183 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 BATF3Q9NR55 127 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 ERAP1Q9NZ08 941 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 SERTAD1Q9UHV2 236 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 RSPH10B2B2RC85 870 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 RSPH10BP0C881 870 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 PSMA2P25787 234 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 PDE6BP35913 854 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 AASDHQ4L235 1098 aaPredicted RBP14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 STX12Q86Y82 276 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 ZNF408Q9H9D4 720 aa14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 MRPL39Q9NYK5 338 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-204ENST00000413716 H7C0S8 307 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 NR2F2P24468 414 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 TTC30AQ86WT1 665 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 AKAP10O43572 662 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 POLR2MP0CAP2 368 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 GSPT1P15170 499 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 OLFM1Q99784 485 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 KLHL25Q9H0H3 589 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 CTIFO43310 598 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 ARMCX2Q7L311 632 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 CENPTQ96BT3 561 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 TSSK1BQ9BXA7 367 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 NHEJ1Q9H9Q4 299 aaPredicted RBP14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 ETNK1Q9HBU6 452 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 SNTNA6NMZ2 147 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 PRKCQQ04759 706 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 MKRN3Q13064 507 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 APOL6Q9BWW8 343 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 LRRC53A6NM62 1247 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 GAP43P17677 238 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 HPCAP84074 193 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 PUDPQ08623 228 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 FBXL5Q9UKA1 691 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 NFU1Q9UMS0 254 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms