RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 TBC1D22BQ9NU19 505 aa32.28■■■□□ 2.76
HMGB1-205ENST00000399494 MUC6Q6W4X9 2439 aa32.27■■■□□ 2.76
HMGB1-205ENST00000399494 DENND3A2RUS2 1198 aa32.27■■■□□ 2.76
HMGB1-205ENST00000399494 GPR182O15218 404 aa32.27■■■□□ 2.76
HMGB1-205ENST00000399494 C22orf31O95567 290 aa32.27■■■□□ 2.76
HMGB1-205ENST00000399494 CRYBB1P53674 252 aaPredicted RBP32.27■■■□□ 2.76
HMGB1-205ENST00000399494 FAM189BP81408 668 aa32.27■■■□□ 2.76
HMGB1-205ENST00000399494 AKAP17AQ02040 695 aaKnown RBP32.27■■■□□ 2.76
HMGB1-205ENST00000399494 COASYQ13057 564 aa32.27■■■□□ 2.76
HMGB1-205ENST00000399494 STK3Q13188 491 aa32.27■■■□□ 2.76
HMGB1-205ENST00000399494 BBXQ8WY36 941 aaPredicted RBP32.27■■■□□ 2.76
HMGB1-205ENST00000399494 ZNF577Q9BSK1 485 aa32.27■■■□□ 2.76
HMGB1-205ENST00000399494 NCOA5Q9HCD5 579 aaKnown RBP32.27■■■□□ 2.76
HMGB1-205ENST00000399494 RNF216Q9NWF9 866 aaPredicted RBP32.27■■■□□ 2.76
HMGB1-205ENST00000399494 MUTYHQ9UIF7 546 aa32.27■■■□□ 2.76
HMGB1-205ENST00000399494 PCDHB12Q9Y5F1 795 aa32.27■■■□□ 2.76
HMGB1-205ENST00000399494 PCDHGC5Q9Y5F6 944 aa32.27■■■□□ 2.76
HMGB1-205ENST00000399494 ESYT2A0FGR8 921 aa32.26■■■□□ 2.75
HMGB1-205ENST00000399494 TBKBP1A7MCY6 615 aa32.26■■■□□ 2.75
HMGB1-205ENST00000399494 KIZQ2M2Z5 673 aa32.26■■■□□ 2.75
HMGB1-205ENST00000399494 MCTP2Q6DN12 878 aa32.26■■■□□ 2.75
HMGB1-205ENST00000399494 ZNF746Q6NUN9 644 aaPredicted RBP32.26■■■□□ 2.75
HMGB1-205ENST00000399494 SMRP1Q8NCR6 262 aa32.26■■■□□ 2.75
HMGB1-205ENST00000399494 UPF2Q9HAU5 1272 aaKnown RBP32.26■■■□□ 2.75
HMGB1-205ENST00000399494 EVPLQ92817 2033 aa32.26■■■□□ 2.75
HMGB1-205ENST00000399494 CPLX1O14810 134 aa32.25■■■□□ 2.75
HMGB1-205ENST00000399494 GPR32O75388 356 aa32.25■■■□□ 2.75
HMGB1-205ENST00000399494 GLP2RO95838 553 aa32.25■■■□□ 2.75
HMGB1-205ENST00000399494 NEK4P51957 841 aa32.25■■■□□ 2.75
HMGB1-205ENST00000399494 AK2P54819 239 aa32.25■■■□□ 2.75
HMGB1-205ENST00000399494 UBE3AQ05086 875 aa32.25■■■□□ 2.75
HMGB1-205ENST00000399494 PKN1Q16512 942 aa32.25■■■□□ 2.75
HMGB1-205ENST00000399494 FAM228AQ86W67 206 aa32.25■■■□□ 2.75
HMGB1-205ENST00000399494 CKAP2LQ8IYA6 745 aa32.25■■■□□ 2.75
HMGB1-205ENST00000399494 C22orf23Q9BZE7 217 aa32.25■■■□□ 2.75
HMGB1-205ENST00000399494 AAASQ9NRG9 546 aa32.25■■■□□ 2.75
HMGB1-205ENST00000399494 TYW1Q9NV66 732 aaKnown RBP32.25■■■□□ 2.75
HMGB1-205ENST00000399494 PLXNA4Q9HCM2 1894 aa32.25■■■□□ 2.75
HMGB1-205ENST00000399494 SPOUT1Q5T280 376 aaKnown RBP32.24■■■□□ 2.75
HMGB1-205ENST00000399494 HFE2Q6ZVN8 426 aa32.24■■■□□ 2.75
HMGB1-205ENST00000399494 MICAL1Q8TDZ2 1067 aa32.24■■■□□ 2.75
HMGB1-205ENST00000399494 PHKBQ93100 1093 aa32.24■■■□□ 2.75
HMGB1-205ENST00000399494 PPP1R16BQ96T49 567 aa32.24■■■□□ 2.75
HMGB1-205ENST00000399494 OSMRQ99650 979 aa32.24■■■□□ 2.75
HMGB1-205ENST00000399494 TLE6Q9H808 572 aa32.24■■■□□ 2.75
HMGB1-205ENST00000399494 C6orf50Q9HD87 102 aa32.24■■■□□ 2.75
HMGB1-205ENST00000399494 FNDC1Q4ZHG4 1894 aaPredicted RBP32.24■■■□□ 2.75
HMGB1-205ENST00000399494 TRIOO75962 3097 aa32.23■■■□□ 2.75
HMGB1-205ENST00000399494 VTNP04004 478 aa32.23■■■□□ 2.75
HMGB1-205ENST00000399494 DSC3Q14574 896 aa32.23■■■□□ 2.75
HMGB1-205ENST00000399494 CPLX2Q6PUV4 134 aaKnown RBP32.23■■■□□ 2.75
HMGB1-205ENST00000399494 TRMT1LQ7Z2T5 733 aaKnown RBP32.23■■■□□ 2.75
HMGB1-205ENST00000399494 SMAP1Q8IYB5 467 aaPredicted RBP32.23■■■□□ 2.75
HMGB1-205ENST00000399494 HCSTQ9UBK5 93 aa32.23■■■□□ 2.75
HMGB1-205ENST00000399494 BARX2Q9UMQ3 279 aaPredicted RBP32.23■■■□□ 2.75
HMGB1-205ENST00000399494 PCDHA10Q9Y5I2 948 aa32.23■■■□□ 2.75
HMGB1-205ENST00000399494 PRPF3O43395 683 aaKnown RBP32.22■■■□□ 2.75
HMGB1-205ENST00000399494 FGF18O76093 207 aa32.22■■■□□ 2.75
HMGB1-205ENST00000399494 PSAPP07602 524 aa32.22■■■□□ 2.75
HMGB1-205ENST00000399494 IFNAR1P17181 557 aa32.22■■■□□ 2.75
HMGB1-205ENST00000399494 SETQ01105 290 aaPredicted RBP32.22■■■□□ 2.75
HMGB1-205ENST00000399494 REXO1Q8N1G1 1221 aaKnown RBP32.22■■■□□ 2.75
HMGB1-205ENST00000399494 METTL13Q8N6R0 699 aa32.22■■■□□ 2.75
HMGB1-205ENST00000399494 SLC26A6Q9BXS9 759 aa32.22■■■□□ 2.75
HMGB1-205ENST00000399494 SLKQ9H2G2 1235 aaPredicted RBP32.22■■■□□ 2.75
HMGB1-205ENST00000399494 CWH43Q9H720 699 aa32.22■■■□□ 2.75
HMGB1-205ENST00000399494 ELAC1Q9H777 363 aaKnown RBP32.22■■■□□ 2.75
HMGB1-205ENST00000399494 TMEM161AQ9NX61 479 aa32.22■■■□□ 2.75
HMGB1-205ENST00000399494 PER2O15055 1255 aa32.21■■■□□ 2.75
HMGB1-205ENST00000399494 ERVFC1P60507 584 aa32.21■■■□□ 2.75
HMGB1-205ENST00000399494 NTRK3Q16288 839 aa32.21■■■□□ 2.75
HMGB1-205ENST00000399494 ALYREFQ86V81 257 aaKnown RBP32.21■■■□□ 2.75
HMGB1-205ENST00000399494 TRIM22Q8IYM9 498 aa32.21■■■□□ 2.75
HMGB1-205ENST00000399494 COLGALT1Q8NBJ5 622 aa32.21■■■□□ 2.75
HMGB1-205ENST00000399494 CCDC12Q8WUD4 166 aaPredicted RBP32.21■■■□□ 2.75
HMGB1-205ENST00000399494 EDAQ92838 391 aa32.21■■■□□ 2.75
HMGB1-205ENST00000399494 RNF26Q9BY78 433 aaPredicted RBP32.21■■■□□ 2.75
HMGB1-205ENST00000399494 KCNH6Q9H252 994 aa32.21■■■□□ 2.75
HMGB1-205ENST00000399494 ATP6V0A4Q9HBG4 840 aa32.21■■■□□ 2.75
HMGB1-205ENST00000399494 TLR9Q9NR96 1032 aa32.21■■■□□ 2.75
HMGB1-205ENST00000399494 GABBR1Q9UBS5 961 aa32.21■■■□□ 2.75
HMGB1-205ENST00000399494 TPCN1Q9ULQ1 816 aa32.21■■■□□ 2.75
HMGB1-205ENST00000399494 LOC730098B7Z3J9 87 aa32.2■■■□□ 2.75
HMGB1-205ENST00000399494 FGFR1P11362 822 aa32.2■■■□□ 2.75
HMGB1-205ENST00000399494 CIITAP33076 1130 aa32.2■■■□□ 2.75
HMGB1-205ENST00000399494 PRR16Q569H4 304 aa32.2■■■□□ 2.75
HMGB1-205ENST00000399494 FBXL18Q96ME1 805 aa32.2■■■□□ 2.75
HMGB1-205ENST00000399494 USP15Q9Y4E8 981 aaPredicted RBP32.2■■■□□ 2.75
HMGB1-205ENST00000399494 GNA11P29992 359 aa32.19■■■□□ 2.74
HMGB1-205ENST00000399494 MAGEB2O15479 319 aa32.18■■■□□ 2.74
HMGB1-205ENST00000399494 CLCN3P51790 818 aa32.18■■■□□ 2.74
HMGB1-205ENST00000399494 RBM10P98175 930 aaKnown RBP32.18■■■□□ 2.74
HMGB1-205ENST00000399494 SSRP1Q08945 709 aaKnown RBP32.18■■■□□ 2.74
HMGB1-205ENST00000399494 CBX2Q14781 532 aaPredicted RBP32.18■■■□□ 2.74
HMGB1-205ENST00000399494 THNSL1Q8IYQ7 743 aa32.18■■■□□ 2.74
HMGB1-205ENST00000399494 LINC01465Q8N7H1 131 aa32.18■■■□□ 2.74
HMGB1-205ENST00000399494 VN1R2Q8NFZ6 395 aa32.18■■■□□ 2.74
HMGB1-205ENST00000399494 LENG9Q96B70 501 aa32.18■■■□□ 2.74
HMGB1-205ENST00000399494 MFSD14AQ96MC6 490 aa32.18■■■□□ 2.74
HMGB1-205ENST00000399494 ADAMTS10Q9H324 1103 aa32.18■■■□□ 2.74
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms