RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 CDK8P49336 464 aa15.89■□□□□ 0.13
CHD4-201ENST00000357008 DYNC1I2Q13409 638 aaKnown RBP15.89■□□□□ 0.13
CHD4-201ENST00000357008 TFDP2Q14188 446 aa15.89■□□□□ 0.13
CHD4-201ENST00000357008 KCTD2Q14681 263 aa15.89■□□□□ 0.13
CHD4-201ENST00000357008 CC2D2BQ6DHV5 1058 aa15.89■□□□□ 0.13
CHD4-201ENST00000357008 CNKSR1Q969H4 720 aa15.89■□□□□ 0.13
CHD4-201ENST00000357008 DDX47Q9H0S4 455 aaKnown RBP15.89■□□□□ 0.13
CHD4-201ENST00000357008 PSAPP07602 524 aa15.89■□□□□ 0.13
CHD4-201ENST00000357008 MCAMP43121 646 aa15.89■□□□□ 0.13
CHD4-201ENST00000357008 TBC1D10CQ8IV04 446 aa15.89■□□□□ 0.13
CHD4-201ENST00000357008 CEP70Q8NHQ1 597 aa15.89■□□□□ 0.13
CHD4-201ENST00000357008 SLC12A6Q9UHW9 1150 aa15.89■□□□□ 0.13
CHD4-201ENST00000357008 WDR64B1ANS9 1081 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 PRR29P0C7W0 189 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 MTERF2Q49AM1 385 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 HP1BP3Q5SSJ5 553 aaPredicted RBP15.88■□□□□ 0.13
CHD4-201ENST00000357008 LCA5Q86VQ0 697 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 DYDC2Q96IM9 177 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 HEXIM2Q96MH2 286 aaKnown RBP15.88■□□□□ 0.13
CHD4-201ENST00000357008 ETNK1Q9HBU6 452 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 ARHGEF5Q12774 1597 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 NCK2O43639 380 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 GDF11O95390 407 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 CDR2Q01850 454 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 RAD54LQ92698 747 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 GRAMD1AQ96CP6 724 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 TGS1Q96RS0 853 aaKnown RBP15.88■□□□□ 0.13
CHD4-201ENST00000357008 LDHAP00338 332 aaKnown RBP15.88■□□□□ 0.13
CHD4-201ENST00000357008 TAC1P20366 129 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 ORC2Q13416 577 aaPredicted RBP15.88■□□□□ 0.13
CHD4-201ENST00000357008 MRPL40Q9NQ50 206 aaKnown RBP15.88■□□□□ 0.13
CHD4-201ENST00000357008 DRP2Q13474 957 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 METTL23Q86XA0 190 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 PI4KBQ9UBF8 816 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 ZBBXA8MT70 800 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 TSTA3Q13630 321 aaPredicted RBP15.88■□□□□ 0.13
CHD4-201ENST00000357008 ZBTB33Q86T24 672 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 ECT2Q9H8V3 914 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 KLC4Q9NSK0 619 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 KPNA7A9QM74 516 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 BBOX1O75936 387 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 AP2B1P63010 937 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 SIX6OS1Q8N1H7 587 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 MSTO1Q9BUK6 570 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 KIFC3Q9BVG8 833 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 HEMGNQ9BXL5 484 aa15.88■□□□□ 0.13
CHD4-201ENST00000357008 HEG1Q9ULI3 1381 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 K7ERI5 159 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 PPEF1O14829 653 aaPredicted RBP15.87■□□□□ 0.13
CHD4-201ENST00000357008 PDHA1P08559 390 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 LTKP29376 864 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 MB21D2Q8IYB1 491 aaPredicted RBP15.87■□□□□ 0.13
CHD4-201ENST00000357008 TMEM35BQ8NCS4 154 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 HSPH1Q92598 858 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 CPSF3Q9UKF6 684 aaKnown RBP15.87■□□□□ 0.13
CHD4-201ENST00000357008 MCF2P10911 925 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 TEDDM1Q5T9Z0 273 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 ACAD11Q709F0 780 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 FAM160B2Q86V87 743 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 SFR1Q86XK3 245 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 VIPAS39Q9H9C1 493 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 ARFIP2P53365 341 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 MKRN3Q13064 507 aaKnown RBP15.87■□□□□ 0.13
CHD4-201ENST00000357008 SPATA4Q8NEY3 305 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 WDR24Q96S15 920 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 USP6P35125 1406 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 TYW5A2RUC4 315 aaKnown RBP15.87■□□□□ 0.13
CHD4-201ENST00000357008 ATP1A1P05023 1023 aaKnown RBP15.87■□□□□ 0.13
CHD4-201ENST00000357008 VSNL1P62760 191 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 ERFEQ4G0M1 354 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 CYB5R4Q7L1T6 521 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 ARHGAP18Q8N392 663 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 XXYLT1Q8NBI6 393 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 TTLL11Q8NHH1 800 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 EDEM3Q9BZQ6 932 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 WDR70Q9NW82 654 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 NEDD4P46934 1319 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 SFI1A8K8P3 1242 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 PEX3P56589 373 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 ARMCX2Q7L311 632 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 SUN2Q9UH99 717 aa15.87■□□□□ 0.13
CHD4-201ENST00000357008 OCA2Q04671 838 aa15.86■□□□□ 0.13
CHD4-201ENST00000357008 COASYQ13057 564 aa15.86■□□□□ 0.13
CHD4-201ENST00000357008 KCNV2Q8TDN2 545 aa15.86■□□□□ 0.13
CHD4-201ENST00000357008 POLR3CQ9BUI4 534 aaPredicted RBP15.86■□□□□ 0.13
CHD4-201ENST00000357008 POTEMA6NI47 508 aa15.86■□□□□ 0.13
CHD4-201ENST00000357008 TMED8Q6PL24 325 aaPredicted RBP15.86■□□□□ 0.13
CHD4-201ENST00000357008 SRLQ86TD4 932 aa15.86■□□□□ 0.13
CHD4-201ENST00000357008 OXER1Q8TDS5 423 aa15.86■□□□□ 0.13
CHD4-201ENST00000357008 ARL13BQ3SXY8 428 aa15.86■□□□□ 0.13
CHD4-201ENST00000357008 SCARA5Q6ZMJ2 495 aa15.86■□□□□ 0.13
CHD4-201ENST00000357008 GUF1Q8N442 669 aaKnown RBP15.86■□□□□ 0.13
CHD4-201ENST00000357008 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.86■□□□□ 0.132e-6■■■■■ 53.5
CHD4-201ENST00000357008 CEP19Q96LK0 163 aa15.86■□□□□ 0.13
CHD4-201ENST00000357008 SMYD3Q9H7B4 428 aa15.86■□□□□ 0.13
CHD4-201ENST00000357008 RPF1Q9H9Y2 349 aaKnown RBP15.86■□□□□ 0.13
CHD4-201ENST00000357008 KIAA1586Q9HCI6 787 aa15.86■□□□□ 0.13
CHD4-201ENST00000357008 NGRNQ9NPE2 291 aaKnown RBP15.86■□□□□ 0.13
CHD4-201ENST00000357008 CAPN11Q9UMQ6 739 aa15.86■□□□□ 0.13
CHD4-201ENST00000357008 TRIM33Q9UPN9 1127 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms