RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 HDAC9Q9UKV0 1011 aa10.49□□□□□ -0.73
HOXA1-201ENST00000343060 USP15Q9Y4E8 981 aaPredicted RBP10.49□□□□□ -0.73
HOXA1-201ENST00000343060 DDX60LQ5H9U9 1706 aaKnown RBP10.49□□□□□ -0.73
HOXA1-201ENST00000343060 ROBO1Q9Y6N7 1651 aa10.49□□□□□ -0.73
HOXA1-201ENST00000343060 ANKRD33BA6NCL7 494 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 SPDYE3A6NKU9 549 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 IGF2BP3O00425 579 aaKnown RBP eCLIP10.48□□□□□ -0.73
HOXA1-201ENST00000343060 CAMTA2O94983 1202 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 GJB6O95452 261 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 PON1P27169 355 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 SKIV2L2P42285 1042 aaKnown RBP10.48□□□□□ -0.73
HOXA1-201ENST00000343060 EPS15P42566 896 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 IFI35P80217 286 aaPredicted RBP10.48□□□□□ -0.73
HOXA1-201ENST00000343060 MAPK7Q13164 816 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 EPHA7Q15375 998 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 ENOX2Q16206 610 aaKnown RBP10.48□□□□□ -0.73
HOXA1-201ENST00000343060 KIAA1755Q5JYT7 1200 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 CAPRIN2Q6IMN6 1127 aaKnown RBP10.48□□□□□ -0.73
HOXA1-201ENST00000343060 VPS36Q86VN1 386 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 JAMLQ86YT9 394 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 CCDC65Q8IXS2 484 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 SLC30A5Q8TAD4 765 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 PLCD4Q9BRC7 762 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 A6NHS1 94 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 WTIPA6NIX2 430 aaPredicted RBP10.48□□□□□ -0.73
HOXA1-201ENST00000343060 CETN3O15182 167 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 DIAPH2O60879 1101 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 SKAP2O75563 359 aaPredicted RBP10.48□□□□□ -0.73
HOXA1-201ENST00000343060 LUC7L3O95232 432 aaKnown RBP10.48□□□□□ -0.73
HOXA1-201ENST00000343060 TDP2O95551 362 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 AFPP02771 609 aaKnown RBP10.48□□□□□ -0.73
HOXA1-201ENST00000343060 SLC9A1P19634 815 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 PTGIRP43119 386 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 COPS2P61201 443 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 CMPK2Q5EBM0 449 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 EGFL6Q8IUX8 553 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 RFFLQ8WZ73 363 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 KANSL2Q9H9L4 492 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 SPATS2LQ9NUQ6 558 aaKnown RBP10.48□□□□□ -0.73
HOXA1-201ENST00000343060 TMEM260Q9NX78 707 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 TRAF3IP3Q9Y228 551 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 KDM3AQ9Y4C1 1321 aa10.48□□□□□ -0.73
HOXA1-201ENST00000343060 KLHL33A6NCF5 533 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 TULP1O00294 542 aaPredicted RBP10.47□□□□□ -0.73
HOXA1-201ENST00000343060 VIMP08670 466 aaKnown RBP10.47□□□□□ -0.73
HOXA1-201ENST00000343060 TMEM253P0C7T8 217 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 TSPY3P0CV98 308 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 TSPY8P0CW00 308 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 ALAS1P13196 640 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 ADAM9Q13443 819 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 SLC29A2Q14542 456 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 PLS1Q14651 629 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 PTPROQ16827 1216 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 EXOC3L4Q17RC7 722 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 ZNF568Q3ZCX4 644 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 C10orf71Q711Q0 1435 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 FBXO25Q8TCJ0 367 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 DYNLL2Q96FJ2 89 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 IFT74Q96LB3 600 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 SH3GL3Q99963 347 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 SYT11Q9BT88 431 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 ERVK-5Q9HDB9 667 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 BIN2Q9UBW5 565 aaPredicted RBP10.47□□□□□ -0.73
HOXA1-201ENST00000343060 RASAL2Q9UJF2 1139 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 AJAP1Q9UKB5 411 aaPredicted RBP10.47□□□□□ -0.73
HOXA1-201ENST00000343060 PCDHA3Q9Y5H8 950 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 GTPBP10A4D1E9 387 aaKnown RBP10.47□□□□□ -0.73
HOXA1-201ENST00000343060 SUN1O94901 812 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 KRT16P08779 473 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 GOLGA8HP0CJ92 632 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 CCNB1P14635 433 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 FERP16591 822 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 HSPA6P17066 643 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 RASA1P20936 1047 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 PRDX5P30044 214 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 GALCP54803 685 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 AUHQ13825 339 aaKnown RBP10.47□□□□□ -0.73
HOXA1-201ENST00000343060 TAOK1Q7L7X3 1001 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 ERICH1Q86X53 443 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 DNAAF5Q86Y56 855 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 NELFCDQ8IXH7 590 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 SAAL1Q96ER3 474 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 TRIM31Q9BZY9 425 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 NT5C3AQ9H0P0 336 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 ADAM22Q9P0K1 906 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 PRKAG3Q9UGI9 489 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 PARP2Q9UGN5 583 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 SEC63Q9UGP8 760 aaKnown RBP10.47□□□□□ -0.73
HOXA1-201ENST00000343060 MINPP1Q9UNW1 487 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 PITPNM2Q9BZ72 1349 aa10.47□□□□□ -0.73
HOXA1-201ENST00000343060 PHF2O75151 1096 aa10.46□□□□□ -0.73
HOXA1-201ENST00000343060 NOVP48745 357 aa10.46□□□□□ -0.73
HOXA1-201ENST00000343060 SF3B3Q15393 1217 aaKnown RBP10.46□□□□□ -0.73
HOXA1-201ENST00000343060 ANKRD20A2Q5SQ80 823 aa10.46□□□□□ -0.73
HOXA1-201ENST00000343060 ANKRD20A1Q5TYW2 823 aa10.46□□□□□ -0.73
HOXA1-201ENST00000343060 ANKRD20A3Q5VUR7 823 aa10.46□□□□□ -0.73
HOXA1-201ENST00000343060 INTS5Q6P9B9 1019 aaKnown RBP10.46□□□□□ -0.73
HOXA1-201ENST00000343060 CADPS2Q86UW7 1296 aa10.46□□□□□ -0.73
HOXA1-201ENST00000343060 LNX1Q8TBB1 728 aaPredicted RBP10.46□□□□□ -0.73
HOXA1-201ENST00000343060 KLHL29Q96CT2 875 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms