RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 IRF2BPLQ9H1B7 796 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 MS4A5Q9H3V2 200 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 SPATA6Q9NWH7 488 aaPredicted RBP4.56□□□□□ -1.68
HMGB1-201ENST00000326004 C14orf119Q9NWQ9 140 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 GOLGA8AA7E2F4 631 aa4.55□□□□□ -1.68
HMGB1-201ENST00000326004 GOLGA8BA8MQT2 603 aa4.55□□□□□ -1.68
HMGB1-201ENST00000326004 NPIPB6E9PJ23 425 aa4.55□□□□□ -1.68
HMGB1-201ENST00000326004 ELL2O00472 640 aaPredicted RBP4.55□□□□□ -1.68
HMGB1-201ENST00000326004 CUTAO60888 179 aa4.55□□□□□ -1.68
HMGB1-201ENST00000326004 APOL3O95236 402 aa4.55□□□□□ -1.68
HMGB1-201ENST00000326004 KNG1P01042 644 aa4.55□□□□□ -1.68
HMGB1-201ENST00000326004 ZNF28P17035 718 aa4.55□□□□□ -1.68
HMGB1-201ENST00000326004 DLX2Q07687 328 aaPredicted RBP4.55□□□□□ -1.68
HMGB1-201ENST00000326004 PDCD1Q15116 288 aa4.55□□□□□ -1.68
HMGB1-201ENST00000326004 FSCN1Q16658 493 aaKnown RBP4.55□□□□□ -1.68
HMGB1-201ENST00000326004 INAVAQ3KP66 663 aa4.55□□□□□ -1.68
HMGB1-201ENST00000326004 WDR72Q3MJ13 1102 aa4.55□□□□□ -1.68
HMGB1-201ENST00000326004 TRMT10BQ6PF06 316 aaKnown RBP4.55□□□□□ -1.68
HMGB1-201ENST00000326004 ORAI2Q96SN7 254 aa4.55□□□□□ -1.68
HMGB1-201ENST00000326004 PITHD1Q9GZP4 211 aaPredicted RBP4.55□□□□□ -1.68
HMGB1-201ENST00000326004 SEMA4AQ9H3S1 761 aa4.55□□□□□ -1.68
HMGB1-201ENST00000326004 METTL14Q9HCE5 456 aaKnown RBP4.55□□□□□ -1.68
HMGB1-201ENST00000326004 KCMF1Q9P0J7 381 aa4.55□□□□□ -1.68
HMGB1-201ENST00000326004 DENND2AQ9ULE3 1009 aa4.55□□□□□ -1.68
HMGB1-201ENST00000326004 PPP2R3BQ9Y5P8 575 aa4.55□□□□□ -1.68
HMGB1-201ENST00000326004 NUMBLQ9Y6R0 609 aa4.55□□□□□ -1.68
HMGB1-201ENST00000326004 SHTN1A0MZ66 631 aa4.54□□□□□ -1.68
HMGB1-201ENST00000326004 LCHNA4D1U4 455 aa4.54□□□□□ -1.68
HMGB1-201ENST00000326004 TRIM75PA6NK02 468 aa4.54□□□□□ -1.68
HMGB1-201ENST00000326004 GABRDO14764 452 aa4.54□□□□□ -1.68
HMGB1-201ENST00000326004 CFBP00751 764 aa4.54□□□□□ -1.68
HMGB1-201ENST00000326004 S100BP04271 92 aaPredicted RBP4.54□□□□□ -1.68
HMGB1-201ENST00000326004 COL6A1P12109 1028 aa4.54□□□□□ -1.68
HMGB1-201ENST00000326004 ENPP1P22413 925 aa4.54□□□□□ -1.68
HMGB1-201ENST00000326004 IL13P35225 146 aa4.54□□□□□ -1.68
HMGB1-201ENST00000326004 SARSP49591 514 aaKnown RBP4.54□□□□□ -1.68
HMGB1-201ENST00000326004 AFF3P51826 1226 aaKnown RBP4.54□□□□□ -1.68
HMGB1-201ENST00000326004 MLLT6P55198 1093 aaPredicted RBP4.54□□□□□ -1.68
HMGB1-201ENST00000326004 SCAND1P57086 179 aa4.54□□□□□ -1.68
HMGB1-201ENST00000326004 KRT85P78386 507 aa4.54□□□□□ -1.68
HMGB1-201ENST00000326004 ZBTB41Q5SVQ8 909 aa4.54□□□□□ -1.68
HMGB1-201ENST00000326004 PHF19Q5T6S3 580 aa4.54□□□□□ -1.68
HMGB1-201ENST00000326004 TMEM200BQ69YZ2 307 aa4.54□□□□□ -1.68
HMGB1-201ENST00000326004 GRAMD4Q6IC98 578 aa4.54□□□□□ -1.68
HMGB1-201ENST00000326004 BMP8AQ7Z5Y6 402 aa4.54□□□□□ -1.68
HMGB1-201ENST00000326004 CBARPQ8N350 705 aaPredicted RBP4.54□□□□□ -1.68
HMGB1-201ENST00000326004 ZCCHC14Q8WYQ9 949 aaKnown RBP4.54□□□□□ -1.68
HMGB1-201ENST00000326004 RAX2Q96IS3 184 aa4.54□□□□□ -1.68
HMGB1-201ENST00000326004 L2HGDHQ9H9P8 463 aa4.54□□□□□ -1.68
HMGB1-201ENST00000326004 FTSJ1Q9UET6 329 aa4.54□□□□□ -1.68
HMGB1-201ENST00000326004 MYPNQ86TC9 1320 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 ADAMTS20P59510 1910 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 A0A0A6YYJ9 748 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 A0A0G2JNJ9 132 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 PRSS38A1L453 326 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 OPHN1O60890 802 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 ALDH1L1O75891 902 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 PFKMP08237 780 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 MTHFD2P13995 350 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 POLD1P28340 1107 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 ETV4P43268 484 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 GPR3P46089 330 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 GPR15P49685 360 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 MRPS9P82933 396 aaKnown RBP4.53□□□□□ -1.68
HMGB1-201ENST00000326004 CD83Q01151 205 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 NOLC1Q14978 699 aaKnown RBP eCLIP4.53□□□□□ -1.68
HMGB1-201ENST00000326004 DGKDQ16760 1214 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 UGT8Q16880 541 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 CCDC178Q5BJE1 867 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 CT83Q5H943 113 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 FAM26FQ5R3K3 315 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 TCERG1LQ5VWI1 586 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 CIAPIN1Q6FI81 312 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 CCDC62Q6P9F0 684 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 REXO1L1PQ8IX06 675 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 AMOTL1Q8IY63 956 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 IFNL2Q8IZJ0 200 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 CARFQ8N187 725 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 CDYL2Q8N8U2 506 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 LINC01356Q8N9X3 169 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 OR5AN1Q8NGI8 311 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 ZNF526Q8TF50 670 aaPredicted RBP4.53□□□□□ -1.68
HMGB1-201ENST00000326004 SSH1Q8WYL5 1049 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 ANO3Q9BYT9 981 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 SLC13A1Q9BZW2 595 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 CCDC8Q9H0W5 538 aaPredicted RBP4.53□□□□□ -1.68
HMGB1-201ENST00000326004 MTG2Q9H4K7 406 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 Q9UFV3 132 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 SYNPO2Q9UMS6 1093 aa4.53□□□□□ -1.68
HMGB1-201ENST00000326004 C9orf118A6NHY6 69 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 DDX3XO00571 662 aaKnown RBP eCLIP4.52□□□□□ -1.693e-10■■■□□ 17.2
HMGB1-201ENST00000326004 FFAR3O14843 346 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 NUAK1O60285 661 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 NRP2O60462 931 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 KLHL18O94889 574 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 MYBL2P10244 700 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 RBP3P10745 1247 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 IARSP41252 1262 aaKnown RBP4.52□□□□□ -1.69
HMGB1-201ENST00000326004 NEK2P51955 445 aa4.52□□□□□ -1.69
HMGB1-201ENST00000326004 EPHB1P54762 984 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms