RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 MRPL42Q9Y6G3 142 aaKnown RBP22.01■■□□□ 1.11
LIME1-201ENST00000309546 CYP3A7-CYP3A51PA0A087WV96 503 aa22■■□□□ 1.11
LIME1-201ENST00000309546 C5orf67F2Z3F1 127 aa22■■□□□ 1.11
LIME1-201ENST00000309546 GPR182O15218 404 aa22■■□□□ 1.11
LIME1-201ENST00000309546 PSMD10O75832 226 aa22■■□□□ 1.11
LIME1-201ENST00000309546 RB1P06400 928 aa22■■□□□ 1.11
LIME1-201ENST00000309546 KCNA5P22460 613 aa22■■□□□ 1.11
LIME1-201ENST00000309546 CYP3A7P24462 503 aa22■■□□□ 1.11
LIME1-201ENST00000309546 TMOD1P28289 359 aa22■■□□□ 1.11
LIME1-201ENST00000309546 CRYBB1P53674 252 aaPredicted RBP22■■□□□ 1.11
LIME1-201ENST00000309546 LETM2Q2VYF4 491 aa22■■□□□ 1.11
LIME1-201ENST00000309546 TCEAL5Q5H9L2 206 aa22■■□□□ 1.11
LIME1-201ENST00000309546 MOXD1Q6UVY6 613 aa22■■□□□ 1.11
LIME1-201ENST00000309546 EP400NLQ6ZTU2 488 aa22■■□□□ 1.11
LIME1-201ENST00000309546 FAM228AQ86W67 206 aa22■■□□□ 1.11
LIME1-201ENST00000309546 CLP1Q92989 425 aaKnown RBP22■■□□□ 1.11
LIME1-201ENST00000309546 ADAM2Q99965 735 aa22■■□□□ 1.11
LIME1-201ENST00000309546 SEPT9Q9UHD8 586 aaPredicted RBP22■■□□□ 1.11
LIME1-201ENST00000309546 GRM6O15303 877 aa21.99■■□□□ 1.11
LIME1-201ENST00000309546 SLC37A4O43826 429 aa21.99■■□□□ 1.11
LIME1-201ENST00000309546 GPR32O75388 356 aa21.99■■□□□ 1.11
LIME1-201ENST00000309546 SARSP49591 514 aaKnown RBP21.99■■□□□ 1.11
LIME1-201ENST00000309546 CRIPAKQ8N1N5 446 aa21.99■■□□□ 1.11
LIME1-201ENST00000309546 RDM1Q8NG50 284 aa21.99■■□□□ 1.11
LIME1-201ENST00000309546 ETNPPLQ8TBG4 499 aa21.99■■□□□ 1.11
LIME1-201ENST00000309546 ZNF668Q96K58 619 aaPredicted RBP21.99■■□□□ 1.11
LIME1-201ENST00000309546 MBOAT7Q96N66 472 aa21.99■■□□□ 1.11
LIME1-201ENST00000309546 SCLT1Q96NL6 688 aa21.99■■□□□ 1.11
LIME1-201ENST00000309546 NSUN3Q9H649 340 aaKnown RBP21.99■■□□□ 1.11
LIME1-201ENST00000309546 ORC3Q9UBD5 711 aaPredicted RBP21.99■■□□□ 1.11
LIME1-201ENST00000309546 PCDHB7Q9Y5E2 793 aa21.99■■□□□ 1.11
LIME1-201ENST00000309546 FNDC1Q4ZHG4 1894 aaPredicted RBP21.98■■□□□ 1.11
LIME1-201ENST00000309546 CTDNEP1O95476 244 aa21.98■■□□□ 1.11
LIME1-201ENST00000309546 NLRP11P59045 1033 aaKnown RBP21.98■■□□□ 1.11
LIME1-201ENST00000309546 TBC1D8BQ0IIM8 1120 aa21.98■■□□□ 1.11
LIME1-201ENST00000309546 MTERF2Q49AM1 385 aa21.98■■□□□ 1.11
LIME1-201ENST00000309546 NEK8Q86SG6 692 aa21.98■■□□□ 1.11
LIME1-201ENST00000309546 NECAB1Q8N987 351 aa21.98■■□□□ 1.11
LIME1-201ENST00000309546 RGS18Q9NS28 235 aa21.98■■□□□ 1.11
LIME1-201ENST00000309546 C1orf112Q9NSG2 853 aa21.98■■□□□ 1.11
LIME1-201ENST00000309546 MYO7AQ13402 2215 aa21.98■■□□□ 1.11
LIME1-201ENST00000309546 TMEM150BA6NC51 233 aa21.97■■□□□ 1.11
LIME1-201ENST00000309546 LARGE1O95461 756 aa21.97■■□□□ 1.11
LIME1-201ENST00000309546 PIK3AP1Q6ZUJ8 805 aa21.97■■□□□ 1.11
LIME1-201ENST00000309546 LINC01465Q8N7H1 131 aa21.97■■□□□ 1.11
LIME1-201ENST00000309546 OXER1Q8TDS5 423 aa21.97■■□□□ 1.11
LIME1-201ENST00000309546 WASF1Q92558 559 aa21.97■■□□□ 1.11
LIME1-201ENST00000309546 LMAN2LQ9H0V9 348 aa21.97■■□□□ 1.11
LIME1-201ENST00000309546 ALG13Q9NP73 1137 aaKnown RBP21.97■■□□□ 1.11
LIME1-201ENST00000309546 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.96■■□□□ 1.11
LIME1-201ENST00000309546 ME3Q16798 604 aa21.96■■□□□ 1.11
LIME1-201ENST00000309546 B3GNT9Q6UX72 402 aa21.96■■□□□ 1.11
LIME1-201ENST00000309546 SLC24A5Q71RS6 500 aa21.96■■□□□ 1.11
LIME1-201ENST00000309546 SH2D3AQ9BRG2 576 aa21.96■■□□□ 1.11
LIME1-201ENST00000309546 PLVAPQ9BX97 442 aa21.96■■□□□ 1.11
LIME1-201ENST00000309546 PLXNA4Q9HCM2 1894 aa21.95■■□□□ 1.1
LIME1-201ENST00000309546 TBKBP1A7MCY6 615 aa21.95■■□□□ 1.1
LIME1-201ENST00000309546 C9IYK1 514 aa21.95■■□□□ 1.1
LIME1-201ENST00000309546 CCNT1O60563 726 aaKnown RBP21.95■■□□□ 1.1
LIME1-201ENST00000309546 FOSBP53539 338 aa21.95■■□□□ 1.1
LIME1-201ENST00000309546 XKR3Q5GH77 459 aa21.95■■□□□ 1.1
LIME1-201ENST00000309546 SPOUT1Q5T280 376 aaKnown RBP21.95■■□□□ 1.1
LIME1-201ENST00000309546 NLRP7Q8WX94 980 aa21.95■■□□□ 1.1
LIME1-201ENST00000309546 GTF3C6Q969F1 213 aa21.95■■□□□ 1.1
LIME1-201ENST00000309546 ADAMTS10Q9H324 1103 aa21.95■■□□□ 1.1
LIME1-201ENST00000309546 RNF216Q9NWF9 866 aaPredicted RBP21.95■■□□□ 1.1
LIME1-201ENST00000309546 MUC3AQ02505 3323 aa21.95■■□□□ 1.1
LIME1-201ENST00000309546 NCOR1O75376 2440 aa21.94■■□□□ 1.1
LIME1-201ENST00000309546 H3BQ06 376 aaPredicted RBP21.94■■□□□ 1.1
LIME1-201ENST00000309546 MARCH6O60337 910 aa21.94■■□□□ 1.1
LIME1-201ENST00000309546 EIF5BO60841 1220 aaKnown RBP21.94■■□□□ 1.1
LIME1-201ENST00000309546 MMP1P03956 469 aa21.94■■□□□ 1.1
LIME1-201ENST00000309546 CENPBP07199 599 aaPredicted RBP21.94■■□□□ 1.1
LIME1-201ENST00000309546 GCFC2P16383 781 aaKnown RBP21.94■■□□□ 1.1
LIME1-201ENST00000309546 GPC3P51654 580 aa21.94■■□□□ 1.1
LIME1-201ENST00000309546 NEK4P51957 841 aa21.94■■□□□ 1.1
LIME1-201ENST00000309546 TARBP2Q15633 366 aaKnown RBP21.94■■□□□ 1.1
LIME1-201ENST00000309546 LEXMQ3ZCV2 418 aa21.94■■□□□ 1.1
LIME1-201ENST00000309546 FAM43BQ6ZT52 329 aaPredicted RBP21.94■■□□□ 1.1
LIME1-201ENST00000309546 BRMS1Q9HCU9 246 aa21.94■■□□□ 1.1
LIME1-201ENST00000309546 CLDND1Q9NY35 253 aa21.94■■□□□ 1.1
LIME1-201ENST00000309546 PLAGL2Q9UPG8 496 aa21.94■■□□□ 1.1
LIME1-201ENST00000309546 FAM205CA6NFA0 338 aa21.93■■□□□ 1.1
LIME1-201ENST00000309546 DDX11L8A8MPP1 907 aa21.93■■□□□ 1.1
LIME1-201ENST00000309546 EML1O00423 815 aa21.93■■□□□ 1.1
LIME1-201ENST00000309546 ITGB1P05556 798 aa21.93■■□□□ 1.1
LIME1-201ENST00000309546 FGFR1P11362 822 aa21.93■■□□□ 1.1
LIME1-201ENST00000309546 FDPSP14324 419 aaKnown RBP21.93■■□□□ 1.1
LIME1-201ENST00000309546 ZSCAN20P17040 1043 aaPredicted RBP21.93■■□□□ 1.1
LIME1-201ENST00000309546 KRT2P35908 639 aa21.93■■□□□ 1.1
LIME1-201ENST00000309546 DRP2Q13474 957 aa21.93■■□□□ 1.1
LIME1-201ENST00000309546 EARS2Q5JPH6 523 aaKnown RBP21.93■■□□□ 1.1
LIME1-201ENST00000309546 FAM102BQ5T8I3 360 aa21.93■■□□□ 1.1
LIME1-201ENST00000309546 KLHL23Q8NBE8 558 aa21.93■■□□□ 1.1
LIME1-201ENST00000309546 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.93■■□□□ 1.1
LIME1-201ENST00000309546 P2RX5Q93086 422 aa21.93■■□□□ 1.1
LIME1-201ENST00000309546 PABPC5Q96DU9 382 aaKnown RBP21.93■■□□□ 1.1
LIME1-201ENST00000309546 NIFKQ9BYG3 293 aaKnown RBP21.93■■□□□ 1.1
LIME1-201ENST00000309546 ATP6V0A4Q9HBG4 840 aa21.93■■□□□ 1.1
LIME1-201ENST00000309546 KCNMB3Q9NPA1 279 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms