RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 LRGUKQ96M69 825 aa8.39□□□□□ -1.07
SCN9A-201ENST00000303354 PCDHB7Q9Y5E2 793 aa8.39□□□□□ -1.07
SCN9A-201ENST00000303354 RRP9O43818 475 aaKnown RBP8.39□□□□□ -1.07
SCN9A-201ENST00000303354 PRR29P0C7W0 189 aa8.39□□□□□ -1.07
SCN9A-201ENST00000303354 DRP2Q13474 957 aa8.39□□□□□ -1.07
SCN9A-201ENST00000303354 ELMSAN1Q6PJG2 1045 aa8.39□□□□□ -1.07
SCN9A-201ENST00000303354 SPATA2LQ8IUW3 424 aaPredicted RBP8.39□□□□□ -1.07
SCN9A-201ENST00000303354 AGAP3Q96P47 875 aa8.39□□□□□ -1.07
SCN9A-201ENST00000303354 SUCLA2Q9P2R7 463 aaPredicted RBP8.39□□□□□ -1.07
SCN9A-201ENST00000303354 SUFUQ9UMX1 484 aa8.39□□□□□ -1.07
SCN9A-201ENST00000303354 PLS3P13797 630 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 PLA2G4FQ68DD2 849 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 HIPK4Q8NE63 616 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 CABS1Q96KC9 395 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 FSD1LQ9BXM9 530 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 COPRSQ9NQ92 184 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 FRMD3A2A2Y4 597 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 ZNF211Q13398 564 aaPredicted RBP8.38□□□□□ -1.07
SCN9A-201ENST00000303354 SLC9A5Q14940 896 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 MAP1SQ66K74 1059 aaPredicted RBP8.38□□□□□ -1.07
SCN9A-201ENST00000303354 RCSD1Q6JBY9 416 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 NSUN6Q8TEA1 469 aaKnown RBP8.38□□□□□ -1.07
SCN9A-201ENST00000303354 PAGE5Q96GU1 130 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 DNAJC6O75061 913 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 BCAR1P56945 870 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 ASPHQ12797 758 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 PCGF5Q86SE9 256 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 C11orf74Q86VG3 221 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 LDHDQ86WU2 507 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 TLK1Q9UKI8 766 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 PGK2P07205 417 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 CIITAP33076 1130 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 ETFBP38117 255 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 SPATA1Q5VX52 437 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 SP110Q9HB58 689 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 PNMA2Q9UL42 364 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 PLEKHG1Q9ULL1 1385 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 TROVE2P10155 538 aaKnown RBP eCLIP8.38□□□□□ -1.07
SCN9A-201ENST00000303354 GLRA4Q5JXX5 417 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 EPB41L5Q9HCM4 733 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 ZNF70Q9UC06 446 aaPredicted RBP8.38□□□□□ -1.07
SCN9A-201ENST00000303354 ADAMTS12P58397 1594 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 CASQ2O14958 399 aaPredicted RBP8.38□□□□□ -1.07
SCN9A-201ENST00000303354 GRIN3BO60391 1043 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 CD2BP2O95400 341 aaKnown RBP8.38□□□□□ -1.07
SCN9A-201ENST00000303354 GNGT1P63211 74 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 QRICH1Q2TAL8 776 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 ARFGAP2Q8N6H7 521 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 GPT2Q8TD30 523 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 MYOZ2Q9NPC6 264 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 EIF2AK4Q9P2K8 1649 aaKnown RBP8.38□□□□□ -1.07
SCN9A-201ENST00000303354 PZPP20742 1482 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 NUP160Q12769 1436 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 EFCAB8A8MWE9 144 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 KIF28PB7ZC32 967 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 PHKA2P46019 1235 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 RMDN1Q96DB5 314 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 ACAD9Q9H845 621 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 RGL2O15211 777 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 CMA1P23946 247 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 GBP1P32455 592 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 CAPRIN1Q14444 709 aaKnown RBP8.38□□□□□ -1.07
SCN9A-201ENST00000303354 ZNF658Q5TYW1 1059 aaPredicted RBP8.38□□□□□ -1.07
SCN9A-201ENST00000303354 KRT82Q9NSB4 513 aa8.38□□□□□ -1.07
SCN9A-201ENST00000303354 MROH7-TTC4A0A0A0MT08 1334 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 ZBTB5O15062 677 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 GRAP2O75791 330 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 GNASQ5JWF2 1037 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 PSPC1Q8WXF1 523 aaKnown RBP8.37□□□□□ -1.07
SCN9A-201ENST00000303354 ZBED1O96006 694 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 BLVRAP53004 296 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 MTM1Q13496 603 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 LBRQ14739 615 aaKnown RBP8.37□□□□□ -1.07
SCN9A-201ENST00000303354 PCSK7Q16549 785 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 RBBP7Q16576 425 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 ARL13BQ3SXY8 428 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 TTC31Q49AM3 519 aaPredicted RBP8.37□□□□□ -1.07
SCN9A-201ENST00000303354 PRR5LQ6MZQ0 368 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 MAP4K1Q92918 833 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 FAM84BQ96KN1 310 aaPredicted RBP8.37□□□□□ -1.07
SCN9A-201ENST00000303354 NUDCD1Q96RS6 583 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 ZNRF3Q9ULT6 936 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 PRG3Q9Y2Y8 225 aaPredicted RBP8.37□□□□□ -1.07
SCN9A-201ENST00000303354 EPN1Q9Y6I3 576 aaPredicted RBP8.37□□□□□ -1.07
SCN9A-201ENST00000303354 GAP43P17677 238 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 MSH2P43246 934 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 UBA3Q8TBC4 463 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 C11orf70Q9BRQ4 267 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 CEP170Q5SW79 1584 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 ARHGAP6O43182 974 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 RPS6KA5O75582 802 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 HDLBPQ00341 1268 aaKnown RBP8.37□□□□□ -1.07
SCN9A-201ENST00000303354 SPIRE2Q8WWL2 714 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 ELMO3Q96BJ8 720 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 ENTPD7Q9NQZ7 604 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 KDM5DQ9BY66 1539 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 MCTP2Q6DN12 878 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 GALNT17Q6IS24 598 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 TRMT10CQ7L0Y3 403 aaKnown RBP8.37□□□□□ -1.07
SCN9A-201ENST00000303354 TMC4Q7Z404 712 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms