RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 IGSF3O75054 1194 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 PPP1R37O75864 691 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 TRPM8Q7Z2W7 1104 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 WDR36Q8NI36 951 aaKnown RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 DDX17Q92841 729 aaKnown RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 TP53INP1Q96A56 240 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 BEGAINQ9BUH8 593 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 GAPVD1Q14C86 1478 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 NBPF26B4DH59 902 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 KCNQ3O43525 872 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 CLK1P49759 484 aaKnown RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 CATSPER3Q86XQ3 398 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 NBPF15Q8N660 670 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 DMAP1Q9NPF5 467 aaPredicted RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 L3MBTL1Q9Y468 752 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 USP15Q9Y4E8 981 aaPredicted RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 ARHGAP32A7KAX9 2087 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 POLR2DO15514 142 aaKnown RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 CTCFP49711 727 aaPredicted RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 SPIDRQ14159 915 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 POLR3EQ9NVU0 708 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 SCN3BQ9NY72 215 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 TRMT6Q9UJA5 497 aaKnown RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 CDY2AQ9Y6F7 541 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 CDY1Q9Y6F8 540 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 GSTA4O15217 222 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 TRIM13O60858 407 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 GSTA3Q16772 222 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 ADCK5Q3MIX3 580 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 ATAD2BQ9ULI0 1458 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 DNALI1O14645 258 aaPredicted RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 SLC26A6Q9BXS9 759 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 TAF1DQ9H5J8 278 aaPredicted RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 ZHX2Q9Y6X8 837 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 PRR14LQ5THK1 2151 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 IDH1O75874 414 aaKnown RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 ECEL1O95672 775 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 CMA1P23946 247 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 MTTPP55157 894 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 ACAP2Q15057 778 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 HP1BP3Q5SSJ5 553 aaPredicted RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 TYW1BQ6NUM6 668 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 SLC10A4Q96EP9 437 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 TRIM51Q9BSJ1 452 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 TRPV6Q9H1D0 765 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 ABCA9Q8IUA7 1624 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 KIAA1217Q5T5P2 1943 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 APOL1O14791 398 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 ZNF263O14978 683 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 CLPTM1O96005 669 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 ZSCAN20P17040 1043 aaPredicted RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 SLC9A1P19634 815 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 CCZ1BP86790 482 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 CCZ1P86791 482 aaPredicted RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 THOC5Q13769 683 aaKnown RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 RCN2Q14257 317 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 KCTD21Q4G0X4 260 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 DDI2Q5TDH0 399 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 MINDY2Q8NBR6 621 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 KCNH5Q8NCM2 988 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 NR1H4Q96RI1 486 aaPredicted RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 OSBPL5Q9H0X9 879 aaPredicted RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 DYNC1LI2O43237 492 aaPredicted RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 PCSK2P16519 638 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 AFMP43652 599 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 PEX5LQ8IYB4 626 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 RFT1Q96AA3 541 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 ANKRD36BP1Q96IX9 119 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 FNBP1Q96RU3 617 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 TRIM31Q9BZY9 425 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 STRIP2Q9ULQ0 834 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 R3HDM2Q9Y2K5 976 aaKnown RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 FAM177BA6PVY3 158 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 EFR3AQ14156 821 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 R3HDM1Q15032 1099 aaKnown RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 ZNF654Q8IZM8 581 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 RBBP8NLQ8NC74 664 aaPredicted RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 MRPL1Q9BYD6 325 aaKnown RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 ING3Q9NXR8 418 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 APPL1Q9UKG1 709 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 NFU1Q9UMS0 254 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 DNMT1P26358 1616 aaKnown RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 KCNJ18B7U540 433 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 TJP3O95049 919 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 GAP43P17677 238 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 STAT5AP42229 794 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 STAT5BP51692 787 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 PMS1P54277 932 aaKnown RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 LRRC63Q05C16 580 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 KCNJ12Q14500 433 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 EXOC8Q8IYI6 725 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 DEPDC7Q96QD5 511 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 PHACTR1Q9C0D0 580 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 GDPD2Q9HCC8 539 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 CYP26B1Q9NR63 512 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 RAB20Q9NX57 234 aa5.16□□□□□ -1.58
CSMD3-201ENST00000297405 PDS5AQ29RF7 1337 aaKnown RBP5.16□□□□□ -1.58
CSMD3-201ENST00000297405 CFAP69A5D8W1 941 aa5.15□□□□□ -1.58
CSMD3-201ENST00000297405 ZC3H11AO75152 810 aaKnown RBP eCLIP5.15□□□□□ -1.58
CSMD3-201ENST00000297405 TPP2P29144 1249 aaPredicted RBP5.15□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms