RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 WDR11Q9BZH6 1224 aa12.45□□□□□ -0.42
VPS33A-201ENST00000267199 DHX36Q9H2U1 1008 aaKnown RBP12.45□□□□□ -0.42
VPS33A-201ENST00000267199 UBE2TQ9NPD8 197 aaPredicted RBP12.45□□□□□ -0.42
VPS33A-201ENST00000267199 AKR1B1P15121 316 aa12.45□□□□□ -0.42
VPS33A-201ENST00000267199 YWHAGP61981 247 aaKnown RBP eCLIP12.45□□□□□ -0.42
VPS33A-201ENST00000267199 FBXO41Q8TF61 875 aa12.45□□□□□ -0.42
VPS33A-201ENST00000267199 POMGNT1Q8WZA1 660 aa12.45□□□□□ -0.42
VPS33A-201ENST00000267199 SPZ1Q9BXG8 430 aa12.45□□□□□ -0.42
VPS33A-201ENST00000267199 OSBPL1AQ9BXW6 950 aa12.45□□□□□ -0.42
VPS33A-201ENST00000267199 ECT2Q9H8V3 914 aa12.45□□□□□ -0.42
VPS33A-201ENST00000267199 PNMA2Q9UL42 364 aa12.45□□□□□ -0.42
VPS33A-201ENST00000267199 PPP1R9AQ9ULJ8 1098 aa12.45□□□□□ -0.42
VPS33A-201ENST00000267199 MAPK4P31152 587 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 HOXA7P31268 230 aaPredicted RBP12.44□□□□□ -0.42
VPS33A-201ENST00000267199 GBP7Q8N8V2 638 aaPredicted RBP12.44□□□□□ -0.42
VPS33A-201ENST00000267199 GIMAP8Q8ND71 665 aaPredicted RBP12.44□□□□□ -0.42
VPS33A-201ENST00000267199 SUPT20HQ8NEM7 779 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 SEC16BQ96JE7 1060 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 COA1Q9GZY4 146 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 VIRMAQ69YN4 1812 aaKnown RBP12.44□□□□□ -0.42
VPS33A-201ENST00000267199 TTI1O43156 1089 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 APBA3O96018 575 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 PHBP35232 272 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 RFC1P35251 1148 aaPredicted RBP12.44□□□□□ -0.42
VPS33A-201ENST00000267199 STAT3P40763 770 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 ARHGAP4P98171 946 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 NT5C1BQ96P26 610 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 TRIM51Q9BSJ1 452 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 A0A0G2JND7 137 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 BRAFP15056 766 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 LIG4P49917 911 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 ITPK1Q13572 414 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 CCDC93Q567U6 631 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 CC2D2BQ6DHV5 1058 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 WDR93Q6P2C0 686 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 KIF2BQ8N4N8 673 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 HIPK4Q8NE63 616 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 ABTB1Q969K4 478 aaPredicted RBP12.44□□□□□ -0.42
VPS33A-201ENST00000267199 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.44□□□□□ -0.42
VPS33A-201ENST00000267199 TCHHQ07283 1943 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 A0A0U1RQJ8 604 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 KIF3CO14782 793 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 CASQ2O14958 399 aaPredicted RBP12.44□□□□□ -0.42
VPS33A-201ENST00000267199 RAD51CO43502 376 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 TRIM37O94972 964 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 NR3C1P04150 777 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 NSFP46459 744 aaKnown RBP12.44□□□□□ -0.42
VPS33A-201ENST00000267199 STAT2P52630 851 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 SEMA3FQ13275 785 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 PTGISQ16647 500 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 QRICH1Q2TAL8 776 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 HP1BP3Q5SSJ5 553 aaPredicted RBP12.44□□□□□ -0.42
VPS33A-201ENST00000267199 ARHGEF16Q5VV41 709 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 ADGRF4Q8IZF3 695 aa12.44□□□□□ -0.42
VPS33A-201ENST00000267199 HNRNPDLO14979 420 aaKnown RBP12.43□□□□□ -0.42
VPS33A-201ENST00000267199 FGFR2P21802 821 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 FGFR4P22455 802 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 RAD23BP54727 409 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 PRKG1Q13976 671 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 DEPTORQ8TB45 409 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 MDM1Q8TC05 714 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 ADAM33Q9BZ11 813 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 MYMKA6NI61 221 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 GH2P01242 217 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 MXI1P50539 228 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 TTBK2Q6IQ55 1244 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 PDXDC1Q6P996 788 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 TRAPPC11Q7Z392 1133 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 FAM217BQ9NTX9 383 aaPredicted RBP12.43□□□□□ -0.42
VPS33A-201ENST00000267199 DCTN4Q9UJW0 460 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 DNAJC12Q9UKB3 198 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 CAPN6Q9Y6Q1 641 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 RASA4BC9J798 803 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 SGK1O00141 431 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 RASA4O43374 803 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 FAM107AO95990 144 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 KRT19P08727 400 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 DMP1Q13316 513 aaPredicted RBP12.43□□□□□ -0.42
VPS33A-201ENST00000267199 SEC23AQ15436 765 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 GEN1Q17RS7 908 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 ZNF746Q6NUN9 644 aaPredicted RBP12.43□□□□□ -0.42
VPS33A-201ENST00000267199 FBXO33Q7Z6M2 555 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 CEP120Q8N960 986 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 SMC1BQ8NDV3 1235 aa12.43□□□□□ -0.42
VPS33A-201ENST00000267199 PRMT1Q99873 361 aaKnown RBP12.43□□□□□ -0.42
VPS33A-201ENST00000267199 MAPK13O15264 365 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 ESRRAP11474 423 aaPredicted RBP12.42□□□□□ -0.42
VPS33A-201ENST00000267199 KLRK1P26718 216 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 MFAP3P55082 362 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 ORC2Q13416 577 aaPredicted RBP12.42□□□□□ -0.42
VPS33A-201ENST00000267199 LRRC23Q53EV4 343 aaPredicted RBP12.42□□□□□ -0.42
VPS33A-201ENST00000267199 C7orf25Q9BPX7 421 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 HEMGNQ9BXL5 484 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 STXBP3O00186 592 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 MYCNP04198 464 aaPredicted RBP12.42□□□□□ -0.42
VPS33A-201ENST00000267199 CHN1P15882 459 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 DYNLT1P63172 113 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 AP3B2Q13367 1082 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 GLYCTKQ8IVS8 523 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms