RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 ODF2Q5BJF6 829 aa10.96□□□□□ -0.65
LIG3-201ENST00000262327 DAAM2Q86T65 1068 aa10.96□□□□□ -0.65
LIG3-201ENST00000262327 LARGE2Q8N3Y3 721 aa10.96□□□□□ -0.65
LIG3-201ENST00000262327 ATP6V1G3Q96LB4 118 aa10.96□□□□□ -0.65
LIG3-201ENST00000262327 EDEM3Q9BZQ6 932 aa10.96□□□□□ -0.65
LIG3-201ENST00000262327 NT5C3AQ9H0P0 336 aa10.96□□□□□ -0.65
LIG3-201ENST00000262327 BHMT2Q9H2M3 363 aa10.96□□□□□ -0.65
LIG3-201ENST00000262327 SEPT11Q9NVA2 429 aaKnown RBP10.96□□□□□ -0.65
LIG3-201ENST00000262327 AIPL1Q9NZN9 384 aa10.96□□□□□ -0.65
LIG3-201ENST00000262327 CHORDC1Q9UHD1 332 aaPredicted RBP10.96□□□□□ -0.65
LIG3-201ENST00000262327 NOC2LQ9Y3T9 749 aaKnown RBP10.96□□□□□ -0.65
LIG3-201ENST00000262327 LTBP3Q9NS15 1303 aa10.96□□□□□ -0.65
LIG3-201ENST00000262327 TTI1O43156 1089 aa10.96□□□□□ -0.66
LIG3-201ENST00000262327 CHMP2AO43633 222 aa10.96□□□□□ -0.66
LIG3-201ENST00000262327 CTNNA1P35221 906 aaKnown RBP10.96□□□□□ -0.66
LIG3-201ENST00000262327 GIT2Q14161 759 aa10.96□□□□□ -0.66
LIG3-201ENST00000262327 PEX26Q7Z412 305 aa10.96□□□□□ -0.66
LIG3-201ENST00000262327 SUGP1Q8IWZ8 645 aaKnown RBP10.96□□□□□ -0.66
LIG3-201ENST00000262327 OTUD6BQ8N6M0 293 aa10.96□□□□□ -0.66
LIG3-201ENST00000262327 ZDHHC15Q96MV8 337 aa10.96□□□□□ -0.66
LIG3-201ENST00000262327 NUCKS1Q9H1E3 243 aaKnown RBP10.96□□□□□ -0.66
LIG3-201ENST00000262327 TAF1DQ9H5J8 278 aaPredicted RBP10.96□□□□□ -0.66
LIG3-201ENST00000262327 KCNQ5Q9NR82 932 aa10.96□□□□□ -0.66
LIG3-201ENST00000262327 MYH7BA7E2Y1 1941 aa10.96□□□□□ -0.66
LIG3-201ENST00000262327 YDJCA8MPS7 323 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 AFPP02771 609 aaKnown RBP10.95□□□□□ -0.66
LIG3-201ENST00000262327 XRCC5P13010 732 aaKnown RBP10.95□□□□□ -0.66
LIG3-201ENST00000262327 TNFRSF8P28908 595 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 ECHS1P30084 290 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 UBXN2AP68543 259 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 ORC2Q13416 577 aaPredicted RBP10.95□□□□□ -0.66
LIG3-201ENST00000262327 PLS1Q14651 629 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 COG2Q14746 738 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 ZC2HC1CQ53FD0 456 aaPredicted RBP10.95□□□□□ -0.66
LIG3-201ENST00000262327 RDH13Q8NBN7 331 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 ZNF473Q8WTR7 871 aaKnown RBP10.95□□□□□ -0.66
LIG3-201ENST00000262327 CCT8L2Q96SF2 557 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 TRIM51Q9BSJ1 452 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 RUSC1Q9BVN2 902 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 GCNT4Q9P109 453 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 PPP1R1BQ9UD71 204 aaPredicted RBP10.95□□□□□ -0.66
LIG3-201ENST00000262327 SERPINA10Q9UK55 444 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 FBXL5Q9UKA1 691 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 PPP1R37O75864 691 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 KIAA0754O94854 1291 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 CRKP46108 304 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 ZNF211Q13398 564 aaPredicted RBP10.95□□□□□ -0.66
LIG3-201ENST00000262327 MKRN4PQ13434 485 aaPredicted RBP10.95□□□□□ -0.66
LIG3-201ENST00000262327 LLGL1Q15334 1064 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 TRMT1LQ7Z2T5 733 aaKnown RBP10.95□□□□□ -0.66
LIG3-201ENST00000262327 NIM1KQ8IY84 436 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 SYN2Q92777 582 aaPredicted RBP10.95□□□□□ -0.66
LIG3-201ENST00000262327 TAOK3Q9H2K8 898 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 ZNF277Q9NRM2 450 aaPredicted RBP10.95□□□□□ -0.66
LIG3-201ENST00000262327 ZNRF3Q9ULT6 936 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 SH3BP1Q9Y3L3 701 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 PSME4Q14997 1843 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 SMIM23A6NLE4 172 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 FAM86B1E9PN63 330 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 GDF11O95390 407 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 GNA14O95837 355 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 VIL1P09327 827 aaKnown RBP10.95□□□□□ -0.66
LIG3-201ENST00000262327 FAM86B2P0C5J1 330 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 EEF2P13639 858 aaKnown RBP10.95□□□□□ -0.66
LIG3-201ENST00000262327 NMT1P30419 496 aaKnown RBP10.95□□□□□ -0.66
LIG3-201ENST00000262327 HNRNPH1P31943 449 aaKnown RBP10.95□□□□□ -0.66
LIG3-201ENST00000262327 MDH1P40925 334 aaKnown RBP10.95□□□□□ -0.66
LIG3-201ENST00000262327 USP11P51784 963 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 ARHGAP4P98171 946 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 CTTNQ14247 550 aaKnown RBP10.95□□□□□ -0.66
LIG3-201ENST00000262327 PPP2R5AQ15172 486 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 PTGISQ16647 500 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 KNOP1Q1ED39 458 aaKnown RBP10.95□□□□□ -0.66
LIG3-201ENST00000262327 LRCH2Q5VUJ6 765 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 KCNV1Q6PIU1 500 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 KDM7AQ6ZMT4 941 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 NLRP14Q86W24 1093 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 GLYCTKQ8IVS8 523 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 TPCN2Q8NHX9 752 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 EPN3Q9H201 632 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 RNF14Q9UBS8 474 aa10.95□□□□□ -0.66
LIG3-201ENST00000262327 KDM3AQ9Y4C1 1321 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 IGKV6D-41A0A0C4DH26 115 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 GOLGA6L10A6NI86 522 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 DDX3XO00571 662 aaKnown RBP eCLIP10.94□□□□□ -0.66
LIG3-201ENST00000262327 SPATA31C1P0DKV0 1188 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 NOVP48745 357 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 MNAT1P51948 309 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 ITGB3BPQ13352 177 aaPredicted RBP10.94□□□□□ -0.66
LIG3-201ENST00000262327 DPY19L2P1Q6NXN4 242 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 AADACL2Q6P093 401 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 RSBN1LQ6PCB5 846 aaPredicted RBP10.94□□□□□ -0.66
LIG3-201ENST00000262327 SPICE1Q8N0Z3 855 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 UHMK1Q8TAS1 419 aaKnown RBP10.94□□□□□ -0.66
LIG3-201ENST00000262327 MYCBPAPQ8TBZ2 947 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 NOVA2Q9UNW9 492 aaKnown RBP10.94□□□□□ -0.66
LIG3-201ENST00000262327 DNM3Q9UQ16 869 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 SCN9AQ15858 1988 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 FER1L6Q2WGJ9 1857 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 GCOM1H8Y6P7 765 aaPredicted RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms