RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 FOXO4P98177 505 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 ADCY1Q08828 1119 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 NEK9Q8TD19 979 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 DHX38Q92620 1227 aaKnown RBP9.35□□□□□ -0.91
PTCD3-201ENST00000254630 RPAP3Q9H6T3 665 aaPredicted RBP9.35□□□□□ -0.91
PTCD3-201ENST00000254630 RNF146Q9NTX7 359 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 DIP2AQ14689 1571 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 POTEMA6NI47 508 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 FAM196BA6NMK8 535 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 CLDN3O15551 220 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 FCER1AP12319 257 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 KRT76Q01546 638 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 SLMAPQ14BN4 828 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 THNSL1Q8IYQ7 743 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 CCDC197Q8NCU1 140 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 CELF1Q92879 486 aaKnown RBP9.35□□□□□ -0.91
PTCD3-201ENST00000254630 IFT43Q96FT9 208 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 FAM213AQ9BRX8 229 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 HACD3Q9P035 362 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 DNAJC12Q9UKB3 198 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 ORC6Q9Y5N6 252 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 NDUFA10O95299 355 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 NR3C1P04150 777 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 ORC2Q13416 577 aaPredicted RBP9.35□□□□□ -0.91
PTCD3-201ENST00000254630 MCPH1Q8NEM0 835 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 ASNSD1Q9NWL6 643 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 POLIQ9UNA4 740 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 KIF20BQ96Q89 1820 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 ZMYND10O75800 440 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 PMLP29590 882 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 COPB2P35606 906 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 MAPK6Q16659 721 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 PODNQ7Z5L7 613 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 RASSF3Q86WH2 238 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 PASD1Q8IV76 773 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 OTUD5Q96G74 571 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 EPS15L1Q9UBC2 864 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 IQANK1A0A1B0GTG1 560 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 IGKV5-2P06315 115 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 STAT3P40763 770 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 RWDD2BP57060 319 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 KIAA1755Q5JYT7 1200 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 FRA10AC1Q70Z53 315 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 ENAHQ8N8S7 591 aaPredicted RBP9.35□□□□□ -0.91
PTCD3-201ENST00000254630 AFG1LQ8WV93 481 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 ALKBH8Q96BT7 664 aaKnown RBP9.35□□□□□ -0.91
PTCD3-201ENST00000254630 SPDL1Q96EA4 605 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 PPME1Q9Y570 386 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 MED14O60244 1454 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 UBE4BO95155 1302 aa9.35□□□□□ -0.91
PTCD3-201ENST00000254630 EVI5O60447 810 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 ATXN8OSP0DMR3 200 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 NFKBIAP25963 317 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 YWHAHQ04917 246 aaPredicted RBP9.34□□□□□ -0.91
PTCD3-201ENST00000254630 TMTC4Q5T4D3 741 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 SWSAP1Q6NVH7 229 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 TOPORSQ9NS56 1045 aaPredicted RBP9.34□□□□□ -0.91
PTCD3-201ENST00000254630 RNF14Q9UBS8 474 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 M0QYV0 167 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 GNGT2O14610 69 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 HUS1O60921 280 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 NSUN2Q08J23 767 aaKnown RBP eCLIP9.34□□□□□ -0.91
PTCD3-201ENST00000254630 ZSCAN26Q16670 478 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 TWF2Q6IBS0 349 aaKnown RBP9.34□□□□□ -0.91
PTCD3-201ENST00000254630 CENPUQ71F23 418 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 PCGF5Q86SE9 256 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 RHOT2Q8IXI1 618 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 GJD4Q96KN9 370 aaPredicted RBP9.34□□□□□ -0.91
PTCD3-201ENST00000254630 ACAD9Q9H845 621 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 GINM1Q9NU53 330 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 PIK3C2BO00750 1634 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 BNIP3LO60238 219 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 MFAP3LO75121 409 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 PROM2Q8N271 834 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 ZNF579Q8NAF0 562 aaKnown RBP9.34□□□□□ -0.91
PTCD3-201ENST00000254630 INTS2Q9H0H0 1204 aaKnown RBP9.34□□□□□ -0.91
PTCD3-201ENST00000254630 DCP1AQ9NPI6 582 aaPredicted RBP9.34□□□□□ -0.91
PTCD3-201ENST00000254630 GABBR1Q9UBS5 961 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 HPCAL4Q9UM19 191 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 AXIN2Q9Y2T1 843 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 PRR29P0C7W0 189 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 SNCBQ16143 134 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 KRT39Q6A163 491 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 OXER1Q8TDS5 423 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 EXT2Q93063 718 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 MRPL4Q9BYD3 311 aaKnown RBP9.34□□□□□ -0.91
PTCD3-201ENST00000254630 KLC2Q9H0B6 622 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 ZMYND12Q9H0C1 365 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 GOLPH3LQ9H4A5 285 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 BARHL2Q9NY43 387 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 TBK1Q9UHD2 729 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 CALB1P05937 261 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 TAC1P20366 129 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 TEX2Q8IWB9 1127 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 SPDYE1Q8NFV5 336 aaPredicted RBP9.34□□□□□ -0.91
PTCD3-201ENST00000254630 CPSF2Q9P2I0 782 aaKnown RBP9.34□□□□□ -0.91
PTCD3-201ENST00000254630 EXOC1LA0A1B0GW35 172 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 USP17L15C9J2P7 530 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 USP17L13C9JLJ4 530 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 USP17L11C9JVI0 530 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms