RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 PRDM5Q9NQX1 630 aaPredicted RBP20.33■□□□□ 0.85
SMPD3-201ENST00000219334 CPSF1Q10570 1443 aaKnown RBP20.33■□□□□ 0.84
SMPD3-201ENST00000219334 MGEA5O60502 916 aa20.33■□□□□ 0.84
SMPD3-201ENST00000219334 PAMP19021 973 aa20.33■□□□□ 0.84
SMPD3-201ENST00000219334 ORC2Q13416 577 aaPredicted RBP20.33■□□□□ 0.84
SMPD3-201ENST00000219334 FGD4Q96M96 766 aa20.33■□□□□ 0.84
SMPD3-201ENST00000219334 OLA1Q9NTK5 396 aaKnown RBP20.33■□□□□ 0.84
SMPD3-201ENST00000219334 PPP1R13BQ96KQ4 1090 aa20.33■□□□□ 0.84
SMPD3-201ENST00000219334 Q9H521 79 aa20.33■□□□□ 0.84
SMPD3-201ENST00000219334 ASNSD1Q9NWL6 643 aa20.33■□□□□ 0.84
SMPD3-201ENST00000219334 CNOT7Q9UIV1 285 aaKnown RBP20.33■□□□□ 0.84
SMPD3-201ENST00000219334 FARP1Q9Y4F1 1045 aaPredicted RBP20.33■□□□□ 0.84
SMPD3-201ENST00000219334 STK36Q9NRP7 1315 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 IPO5O00410 1097 aaKnown RBP20.32■□□□□ 0.84
SMPD3-201ENST00000219334 NMT2O60551 498 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 HIP1RO75146 1068 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 CHEK2O96017 543 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 NR3C1P04150 777 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 ALKBH8Q96BT7 664 aaKnown RBP20.32■□□□□ 0.84
SMPD3-201ENST00000219334 FAN1Q9Y2M0 1017 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 PCDHA13Q9Y5I0 950 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 SUN1O94901 812 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 IL1RL1Q01638 556 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 TFDP2Q14188 446 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 SLMAPQ14BN4 828 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 R3HDM1Q15032 1099 aaKnown RBP20.32■□□□□ 0.84
SMPD3-201ENST00000219334 MUM1Q2TAK8 710 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 KIAA1755Q5JYT7 1200 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 TTC39CQ8N584 583 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 AFG1LQ8WV93 481 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 CFAP36Q96G28 342 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 STRIP2Q9ULQ0 834 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 STAP1Q9ULZ2 295 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 EVI5O60447 810 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 HSPA8P11142 646 aaKnown RBP20.32■□□□□ 0.84
SMPD3-201ENST00000219334 DEPDC1BQ8WUY9 529 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 PPP2R3CQ969Q6 453 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 FIS1Q9Y3D6 152 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 A0A0G2JLW4 131 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 IFNAR2P48551 515 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 EPHB4P54760 987 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 TRIP13Q15645 432 aaPredicted RBP20.32■□□□□ 0.84
SMPD3-201ENST00000219334 RBM46Q8TBY0 533 aaKnown RBP20.32■□□□□ 0.84
SMPD3-201ENST00000219334 RABGGTAQ92696 567 aa20.32■□□□□ 0.84
SMPD3-201ENST00000219334 FAM84BQ96KN1 310 aaPredicted RBP20.32■□□□□ 0.84
SMPD3-201ENST00000219334 E9PMD0 336 aa20.31■□□□□ 0.84
SMPD3-201ENST00000219334 GCLMP48507 274 aa20.31■□□□□ 0.84
SMPD3-201ENST00000219334 VEPH1Q14D04 833 aa20.31■□□□□ 0.84
SMPD3-201ENST00000219334 ADGRF4Q8IZF3 695 aa20.31■□□□□ 0.84
SMPD3-201ENST00000219334 PDZD8Q8NEN9 1154 aa20.31■□□□□ 0.84
SMPD3-201ENST00000219334 RAD54LQ92698 747 aa20.31■□□□□ 0.84
SMPD3-201ENST00000219334 ACAP3Q96P50 834 aa20.31■□□□□ 0.84
SMPD3-201ENST00000219334 CRAMP1Q96RY5 1269 aa20.31■□□□□ 0.84
SMPD3-201ENST00000219334 SPTLC3Q9NUV7 552 aa20.31■□□□□ 0.84
SMPD3-201ENST00000219334 ADAMTS1Q9UHI8 967 aa20.31■□□□□ 0.84
SMPD3-201ENST00000219334 LCMT1Q9UIC8 334 aa20.31■□□□□ 0.84
SMPD3-201ENST00000219334 TJP3O95049 919 aa20.31■□□□□ 0.84
SMPD3-201ENST00000219334 SERPINB6P35237 376 aa20.31■□□□□ 0.84
SMPD3-201ENST00000219334 TMEM270Q6UE05 265 aa20.31■□□□□ 0.84
SMPD3-201ENST00000219334 CDC26Q8NHZ8 85 aa20.31■□□□□ 0.84
SMPD3-201ENST00000219334 POLR3FQ9H1D9 316 aaPredicted RBP20.31■□□□□ 0.84
SMPD3-201ENST00000219334 KLHL8Q9P2G9 620 aaPredicted RBP20.31■□□□□ 0.84
SMPD3-201ENST00000219334 KLC2Q9H0B6 622 aa20.31■□□□□ 0.84
SMPD3-201ENST00000219334 HACL1Q9UJ83 578 aa20.31■□□□□ 0.84
SMPD3-201ENST00000219334 CALB1P05937 261 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 CPB1P15086 417 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 SPATS2Q86XZ4 545 aaKnown RBP20.3■□□□□ 0.84
SMPD3-201ENST00000219334 TBXAS1P24557 533 aaPredicted RBP20.3■□□□□ 0.84
SMPD3-201ENST00000219334 PAPOLAP51003 745 aaKnown RBP20.3■□□□□ 0.84
SMPD3-201ENST00000219334 PROM2Q8N271 834 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 MB21D1Q8N884 522 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 NEDD1Q8NHV4 660 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 PDCD6IPQ8WUM4 868 aaKnown RBP20.3■□□□□ 0.84
SMPD3-201ENST00000219334 SEL1LQ9UBV2 794 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 KIF1BO60333 1816 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 GNGT2O14610 69 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 ADCY1Q08828 1119 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 COG2Q14746 738 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 ALX1Q15699 326 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 PTPN21Q16825 1174 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 ACRBPQ8NEB7 543 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 SLC13A4Q9UKG4 626 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 LARGE1O95461 756 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 CXCR5P32302 372 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 RCN2Q14257 317 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 CENPUQ71F23 418 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 CNOT8Q9UFF9 292 aaKnown RBP20.3■□□□□ 0.84
SMPD3-201ENST00000219334 PRDM15P57071 1507 aaPredicted RBP20.3■□□□□ 0.84
SMPD3-201ENST00000219334 UBE4BO95155 1302 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 WDR19Q8NEZ3 1342 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 NDUFA10O95299 355 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 TXNP10599 105 aaKnown RBP20.3■□□□□ 0.84
SMPD3-201ENST00000219334 DHX9Q08211 1270 aaKnown RBP20.3■□□□□ 0.84
SMPD3-201ENST00000219334 STRIP1Q5VSL9 837 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 TRIM67Q6ZTA4 783 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 CYB5R4Q7L1T6 521 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 LDHDQ86WU2 507 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 SRRM1Q8IYB3 904 aaKnown RBP20.3■□□□□ 0.84
SMPD3-201ENST00000219334 IFT43Q96FT9 208 aa20.3■□□□□ 0.84
SMPD3-201ENST00000219334 SPATA31A6Q5VVP1 1343 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms