RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 DDX54Q8TDD1 881 aaKnown RBP5□□□□□ -1.61
SCN1A-220ENST00000641603 ING2Q9H160 280 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 EIF4ENIF1Q9NRA8 985 aaKnown RBP5□□□□□ -1.61
SCN1A-220ENST00000641603 FRMD4AQ9P2Q2 1039 aaPredicted RBP5□□□□□ -1.61
SCN1A-220ENST00000641603 SAP30BPQ9UHR5 308 aaKnown RBP5□□□□□ -1.61
SCN1A-220ENST00000641603 ARHGEF40Q8TER5 1519 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 PVALEFA0A1B0GWK0 134 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 EVPLLA8MZ36 301 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 ITIH2P19823 946 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 PTPREP23469 700 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 RPS6KA2Q15349 733 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 RINT1Q6NUQ1 792 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 ZFP1Q6P2D0 407 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 WDR24Q96S15 920 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 OSBPL8Q9BZF1 889 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 STMN3Q9NZ72 180 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 SHOX2O60902 331 aaPredicted RBP5□□□□□ -1.61
SCN1A-220ENST00000641603 RTN3O95197 1032 aaPredicted RBP5□□□□□ -1.61
SCN1A-220ENST00000641603 MYBL1P10243 752 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 PTPN4P29074 926 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 SLC12A2P55011 1212 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 DLG4P78352 724 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 MRPL28Q13084 256 aaKnown RBP5□□□□□ -1.61
SCN1A-220ENST00000641603 PTK2BQ14289 1009 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 NECTIN1Q15223 517 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 RNF207Q6ZRF8 634 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 ACAD11Q709F0 780 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 SNF8Q96H20 258 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 EMILIN1Q9Y6C2 1016 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 GOLGA8JA6NMD2 632 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 TMEM110-MUSTN1A8MSY1 372 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 IGF2BP3O00425 579 aaKnown RBP eCLIP5□□□□□ -1.61
SCN1A-220ENST00000641603 SYF2O95926 243 aaKnown RBP5□□□□□ -1.61
SCN1A-220ENST00000641603 ATP4AP20648 1035 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 CDC27P30260 824 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 EIF4A3P38919 411 aaKnown RBP5□□□□□ -1.61
SCN1A-220ENST00000641603 MTTPP55157 894 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 ZNF662Q6ZS27 426 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 PAGR1Q9BTK6 254 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 PXDNLA1KZ92 1463 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 CAND2O75155 1236 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 BFSP1Q12934 665 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 FAM26FQ5R3K3 315 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 QKIQ96PU8 341 aaKnown RBP eCLIP5□□□□□ -1.611e-6■■■■□ 23.5
SCN1A-220ENST00000641603 WNT8AQ9H1J5 351 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 DNM3Q9UQ16 869 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 WDR7Q9Y4E6 1490 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 CD2BP2O95400 341 aaKnown RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 FCGR1AP12314 374 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 BRAFP15056 766 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 CALB2P22676 271 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 ARHGDIAP52565 204 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 RPL26P61254 145 aaKnown RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 TMED2Q15363 201 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 HDDC2Q7Z4H3 204 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 GALNT15Q8N3T1 639 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 C19orf60Q96EN9 201 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 OLFM1Q99784 485 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 NDEL1Q9GZM8 345 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 SPINK5Q9NQ38 1064 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 FBXL5Q9UKA1 691 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 PALD1Q9ULE6 856 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 SLC4A4Q9Y6R1 1079 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 H2AFYO75367 372 aaKnown RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 ATP6V1C1P21283 382 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 RSPH1Q8WYR4 309 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 LENG1Q96BZ8 264 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 TCEANC2Q96MN5 208 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 FRMD8P1Q9BZ68 369 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 COPG2Q9UBF2 871 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 ARIH1Q9Y4X5 557 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 USP42Q9H9J4 1324 aaKnown RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 TAF5LO75529 589 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 PAX7P23759 505 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 PARP6Q2NL67 630 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 PRPF31Q8WWY3 499 aaKnown RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 HAUS7Q99871 368 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 DDX28Q9NUL7 540 aaKnown RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 MAST3O60307 1309 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 H3BNX3 289 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 MYO1FO00160 1098 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 AP3B1O00203 1094 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 TRPA1O75762 1119 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 KRT76Q01546 638 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 TUBA3EQ6PEY2 450 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 MYLK4Q86YV6 388 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 FAM212AQ96EL1 285 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 PGM2Q96G03 612 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 FHDC1Q9C0D6 1143 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 RWDD3Q9Y3V2 267 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 SQORQ9Y6N5 450 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 CDK12Q9NYV4 1490 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 PNMA8CA0A1B0GUJ8 204 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 ZBTB22O15209 634 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 RPL5P46777 297 aaKnown RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 FNTAP49354 379 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 HAND2P61296 217 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 CYTH1Q15438 398 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 TSHZ3Q63HK5 1081 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 PRR23BQ6ZRT6 265 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms