RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 COL9A3Q14050 684 aaPredicted RBP17.12■□□□□ 0.33
SYNE2-228ENST00000639659 FAM102BQ5T8I3 360 aa17.12■□□□□ 0.33
SYNE2-228ENST00000639659 LLGL2Q6P1M3 1020 aa17.12■□□□□ 0.33
SYNE2-228ENST00000639659 TMTC3Q6ZXV5 915 aa17.12■□□□□ 0.33
SYNE2-228ENST00000639659 CRIPAKQ8N1N5 446 aa17.12■□□□□ 0.33
SYNE2-228ENST00000639659 TMTC2Q8N394 836 aa17.12■□□□□ 0.33
SYNE2-228ENST00000639659 NEK1Q96PY6 1258 aa17.12■□□□□ 0.33
SYNE2-228ENST00000639659 PHF7Q9BWX1 381 aaPredicted RBP17.12■□□□□ 0.33
SYNE2-228ENST00000639659 ANO3Q9BYT9 981 aa17.12■□□□□ 0.33
SYNE2-228ENST00000639659 CDHR5Q9HBB8 845 aa17.12■□□□□ 0.33
SYNE2-228ENST00000639659 FAM86C1Q9NVL1 165 aa17.12■□□□□ 0.33
SYNE2-228ENST00000639659 TMEM260Q9NX78 707 aa17.12■□□□□ 0.33
SYNE2-228ENST00000639659 FGFR1P11362 822 aa17.11■□□□□ 0.33
SYNE2-228ENST00000639659 ITGB3BPQ13352 177 aaPredicted RBP17.11■□□□□ 0.33
SYNE2-228ENST00000639659 FAM160B1Q5W0V3 765 aa17.11■□□□□ 0.33
SYNE2-228ENST00000639659 WWC2Q6AWC2 1192 aa17.11■□□□□ 0.33
SYNE2-228ENST00000639659 SYNE3Q6ZMZ3 975 aa17.11■□□□□ 0.33
SYNE2-228ENST00000639659 PLPPR4Q7Z2D5 763 aa17.11■□□□□ 0.33
SYNE2-228ENST00000639659 CKAP2LQ8IYA6 745 aa17.11■□□□□ 0.33
SYNE2-228ENST00000639659 NME8Q8N427 588 aa17.11■□□□□ 0.33
SYNE2-228ENST00000639659 FBXL6Q8N531 539 aa17.11■□□□□ 0.33
SYNE2-228ENST00000639659 COLGALT1Q8NBJ5 622 aa17.11■□□□□ 0.33
SYNE2-228ENST00000639659 AGO4Q9HCK5 861 aaKnown RBP17.11■□□□□ 0.33
SYNE2-228ENST00000639659 ERVK-5Q9HDB9 667 aa17.11■□□□□ 0.33
SYNE2-228ENST00000639659 ENTPD7Q9NQZ7 604 aa17.11■□□□□ 0.33
SYNE2-228ENST00000639659 NFASCO94856 1347 aa17.11■□□□□ 0.33
SYNE2-228ENST00000639659 SRGAP2BP0DMP2 458 aa17.1■□□□□ 0.33
SYNE2-228ENST00000639659 CA8P35219 290 aa17.1■□□□□ 0.33
SYNE2-228ENST00000639659 TECP42680 631 aa17.1■□□□□ 0.33
SYNE2-228ENST00000639659 ADCY7P51828 1080 aa17.1■□□□□ 0.33
SYNE2-228ENST00000639659 ERVFC1P60507 584 aa17.1■□□□□ 0.33
SYNE2-228ENST00000639659 KIZQ2M2Z5 673 aa17.1■□□□□ 0.33
SYNE2-228ENST00000639659 CEP55Q53EZ4 464 aa17.1■□□□□ 0.33
SYNE2-228ENST00000639659 PDXDC2PQ6P474 469 aa17.1■□□□□ 0.33
SYNE2-228ENST00000639659 FANCBQ8NB91 859 aa17.1■□□□□ 0.33
SYNE2-228ENST00000639659 VN1R2Q8NFZ6 395 aa17.1■□□□□ 0.33
SYNE2-228ENST00000639659 TMEM40Q8WWA1 233 aa17.1■□□□□ 0.33
SYNE2-228ENST00000639659 OSMRQ99650 979 aa17.1■□□□□ 0.33
SYNE2-228ENST00000639659 TSHZ2Q9NRE2 1034 aa17.1■□□□□ 0.33
SYNE2-228ENST00000639659 TYW1Q9NV66 732 aaKnown RBP17.1■□□□□ 0.33
SYNE2-228ENST00000639659 ST3GAL5Q9UNP4 418 aa17.1■□□□□ 0.33
SYNE2-228ENST00000639659 KDM3AQ9Y4C1 1321 aa17.1■□□□□ 0.33
SYNE2-228ENST00000639659 EVPLQ92817 2033 aa17.09■□□□□ 0.33
SYNE2-228ENST00000639659 SLC27A2O14975 620 aa17.09■□□□□ 0.33
SYNE2-228ENST00000639659 HBP1O60381 514 aa17.09■□□□□ 0.33
SYNE2-228ENST00000639659 VCPP55072 806 aaKnown RBP17.09■□□□□ 0.33
SYNE2-228ENST00000639659 UBE3AQ05086 875 aa17.09■□□□□ 0.33
SYNE2-228ENST00000639659 SIGLEC14Q08ET2 396 aa17.09■□□□□ 0.33
SYNE2-228ENST00000639659 DUSP6Q16828 381 aa17.09■□□□□ 0.33
SYNE2-228ENST00000639659 BMP8AQ7Z5Y6 402 aa17.09■□□□□ 0.33
SYNE2-228ENST00000639659 METTL13Q8N6R0 699 aa17.09■□□□□ 0.33
SYNE2-228ENST00000639659 MTA3Q9BTC8 594 aa17.09■□□□□ 0.33
SYNE2-228ENST00000639659 ATP6V0A4Q9HBG4 840 aa17.09■□□□□ 0.33
SYNE2-228ENST00000639659 ZNF302Q9NR11 478 aa17.09■□□□□ 0.33
SYNE2-228ENST00000639659 C1orf112Q9NSG2 853 aa17.09■□□□□ 0.33
SYNE2-228ENST00000639659 TCEAL9Q9UHQ7 104 aa17.09■□□□□ 0.33
SYNE2-228ENST00000639659 CNTNAP5Q8WYK1 1306 aa17.09■□□□□ 0.33
SYNE2-228ENST00000639659 KMT2EQ8IZD2 1858 aa17.09■□□□□ 0.33
SYNE2-228ENST00000639659 GPR182O15218 404 aa17.08■□□□□ 0.32
SYNE2-228ENST00000639659 CCNE2O96020 404 aa17.08■□□□□ 0.32
SYNE2-228ENST00000639659 VTNP04004 478 aa17.08■□□□□ 0.32
SYNE2-228ENST00000639659 PBX3P40426 434 aa17.08■□□□□ 0.32
SYNE2-228ENST00000639659 LIFRP42702 1097 aa17.08■□□□□ 0.32
SYNE2-228ENST00000639659 CBX2Q14781 532 aaPredicted RBP17.08■□□□□ 0.32
SYNE2-228ENST00000639659 ODR4Q5SWX8 454 aa17.08■□□□□ 0.32
SYNE2-228ENST00000639659 TYW1BQ6NUM6 668 aa17.08■□□□□ 0.32
SYNE2-228ENST00000639659 SLC24A5Q71RS6 500 aa17.08■□□□□ 0.32
SYNE2-228ENST00000639659 CCDC60Q8IWA6 550 aaPredicted RBP17.08■□□□□ 0.32
SYNE2-228ENST00000639659 KIAA0319LQ8IZA0 1049 aa17.08■□□□□ 0.32
SYNE2-228ENST00000639659 RNF169Q8NCN4 708 aa17.08■□□□□ 0.32
SYNE2-228ENST00000639659 ATP8B4Q8TF62 1192 aa17.08■□□□□ 0.32
SYNE2-228ENST00000639659 CDCA3Q99618 268 aaPredicted RBP17.08■□□□□ 0.32
SYNE2-228ENST00000639659 TCF25Q9BQ70 676 aa17.08■□□□□ 0.32
SYNE2-228ENST00000639659 RIC8AQ9NPQ8 531 aa17.08■□□□□ 0.32
SYNE2-228ENST00000639659 RGS18Q9NS28 235 aa17.08■□□□□ 0.32
SYNE2-228ENST00000639659 RNF216Q9NWF9 866 aaPredicted RBP17.08■□□□□ 0.32
SYNE2-228ENST00000639659 NAP1L2Q9ULW6 460 aaPredicted RBP17.08■□□□□ 0.32
SYNE2-228ENST00000639659 C9IYK1 514 aa17.07■□□□□ 0.32
SYNE2-228ENST00000639659 LAG3P18627 525 aa17.07■□□□□ 0.32
SYNE2-228ENST00000639659 SLC26A2P50443 739 aa17.07■□□□□ 0.32
SYNE2-228ENST00000639659 TCF15Q12870 199 aa17.07■□□□□ 0.32
SYNE2-228ENST00000639659 PKN1Q16512 942 aa17.07■□□□□ 0.32
SYNE2-228ENST00000639659 JAKMIP3Q5VZ66 844 aa17.07■□□□□ 0.32
SYNE2-228ENST00000639659 CREB3L3Q68CJ9 461 aa17.07■□□□□ 0.32
SYNE2-228ENST00000639659 SWSAP1Q6NVH7 229 aa17.07■□□□□ 0.32
SYNE2-228ENST00000639659 MIS18BP1Q6P0N0 1132 aa17.07■□□□□ 0.32
SYNE2-228ENST00000639659 FAM228AQ86W67 206 aa17.07■□□□□ 0.32
SYNE2-228ENST00000639659 PLA2G4DQ86XP0 818 aa17.07■□□□□ 0.32
SYNE2-228ENST00000639659 ABI1Q8IZP0 508 aa17.07■□□□□ 0.32
SYNE2-228ENST00000639659 ZNF668Q96K58 619 aaPredicted RBP17.07■□□□□ 0.32
SYNE2-228ENST00000639659 TCEANC2Q96MN5 208 aa17.07■□□□□ 0.32
SYNE2-228ENST00000639659 PRRX2Q99811 253 aa17.07■□□□□ 0.32
SYNE2-228ENST00000639659 ANO2Q9NQ90 1003 aa17.07■□□□□ 0.32
SYNE2-228ENST00000639659 SMCO2A6NFE2 343 aa17.06■□□□□ 0.32
SYNE2-228ENST00000639659 FOSP01100 380 aaPredicted RBP17.06■□□□□ 0.32
SYNE2-228ENST00000639659 ATF7P17544 494 aaPredicted RBP17.06■□□□□ 0.32
SYNE2-228ENST00000639659 IRX6P78412 446 aaPredicted RBP17.06■□□□□ 0.32
SYNE2-228ENST00000639659 RTN1Q16799 776 aa17.06■□□□□ 0.32
SYNE2-228ENST00000639659 PTPN21Q16825 1174 aa17.06■□□□□ 0.32
SYNE2-228ENST00000639659 ZNF484Q5JVG2 852 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms