RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 SPDYAQ5MJ70 313 aa6.43□□□□□ -1.38
CD44-239ENST00000639002 TMEM200BQ69YZ2 307 aa6.43□□□□□ -1.38
CD44-239ENST00000639002 Q6ZSN1 163 aa6.43□□□□□ -1.38
CD44-239ENST00000639002 OTOP1Q7RTM1 612 aa6.43□□□□□ -1.38
CD44-239ENST00000639002 FUKQ8N0W3 1084 aa6.43□□□□□ -1.38
CD44-239ENST00000639002 SCYL1Q96KG9 808 aa6.43□□□□□ -1.38
CD44-239ENST00000639002 CDK5RAP1Q96SZ6 601 aaKnown RBP6.43□□□□□ -1.38
CD44-239ENST00000639002 ZNF747Q9BV97 191 aa6.43□□□□□ -1.38
CD44-239ENST00000639002 OSBPL2Q9H1P3 480 aa6.43□□□□□ -1.38
CD44-239ENST00000639002 OR10A5Q9H207 317 aa6.43□□□□□ -1.38
CD44-239ENST00000639002 KANSL2Q9H9L4 492 aa6.43□□□□□ -1.38
CD44-239ENST00000639002 CDK11AQ9UQ88 783 aaPredicted RBP6.43□□□□□ -1.38
CD44-239ENST00000639002 SLC12A8A0AV02 714 aa6.42□□□□□ -1.38
CD44-239ENST00000639002 PLSCR1O15162 318 aa6.42□□□□□ -1.38
CD44-239ENST00000639002 FOXP2O15409 715 aa6.42□□□□□ -1.38
CD44-239ENST00000639002 RAPGEF3O95398 923 aa6.42□□□□□ -1.38
CD44-239ENST00000639002 RAC3P60763 192 aa6.42□□□□□ -1.38
CD44-239ENST00000639002 SQSTM1Q13501 440 aa6.42□□□□□ -1.38
CD44-239ENST00000639002 SF3A1Q15459 793 aaKnown RBP6.42□□□□□ -1.38
CD44-239ENST00000639002 AGBL4Q5VU57 503 aa6.42□□□□□ -1.38
CD44-239ENST00000639002 BCL6BQ8N143 479 aaPredicted RBP6.42□□□□□ -1.38
CD44-239ENST00000639002 GIMAP8Q8ND71 665 aaPredicted RBP6.42□□□□□ -1.38
CD44-239ENST00000639002 FOXRED1Q96CU9 486 aaPredicted RBP6.42□□□□□ -1.38
CD44-239ENST00000639002 DPYSL5Q9BPU6 564 aa6.42□□□□□ -1.38
CD44-239ENST00000639002 FBXO10Q9UK96 956 aa6.42□□□□□ -1.38
CD44-239ENST00000639002 OAZ3Q9UMX2 235 aa6.42□□□□□ -1.38
CD44-239ENST00000639002 TCAF1Q9Y4C2 921 aa6.42□□□□□ -1.38
CD44-239ENST00000639002 A0A0G2JNJ9 132 aa6.41□□□□□ -1.38
CD44-239ENST00000639002 DVL2O14641 736 aa6.41□□□□□ -1.38
CD44-239ENST00000639002 PLD2O14939 933 aa6.41□□□□□ -1.38
CD44-239ENST00000639002 MUSKO15146 869 aa6.41□□□□□ -1.38
CD44-239ENST00000639002 NPTXRO95502 500 aa6.41□□□□□ -1.38
CD44-239ENST00000639002 HMGCRP04035 888 aa6.41□□□□□ -1.38
CD44-239ENST00000639002 CR2P20023 1033 aa6.41□□□□□ -1.38
CD44-239ENST00000639002 MOGSQ13724 837 aa6.41□□□□□ -1.38
CD44-239ENST00000639002 TMEM132BQ14DG7 1078 aa6.41□□□□□ -1.38
CD44-239ENST00000639002 PCOLCEQ15113 449 aa6.41□□□□□ -1.38
CD44-239ENST00000639002 ZMAT1Q5H9K5 638 aa6.41□□□□□ -1.38
CD44-239ENST00000639002 CRIP3Q6Q6R5 217 aa6.41□□□□□ -1.38
CD44-239ENST00000639002 RTN4RL1Q86UN2 441 aaPredicted RBP6.41□□□□□ -1.38
CD44-239ENST00000639002 SLC16A11Q8NCK7 471 aa6.41□□□□□ -1.38
CD44-239ENST00000639002 SCAND2PQ9GZW5 306 aaPredicted RBP6.41□□□□□ -1.38
CD44-239ENST00000639002 Q9UFV3 132 aa6.41□□□□□ -1.38
CD44-239ENST00000639002 NR2E1Q9Y466 385 aa6.41□□□□□ -1.38
CD44-239ENST00000639002 ASB1Q9Y576 335 aa6.41□□□□□ -1.38
CD44-239ENST00000639002 ARHGAP6O43182 974 aa6.4□□□□□ -1.38
CD44-239ENST00000639002 FSHBP01225 129 aa6.4□□□□□ -1.38
CD44-239ENST00000639002 AMHP03971 560 aa6.4□□□□□ -1.38
CD44-239ENST00000639002 C6P13671 934 aa6.4□□□□□ -1.38
CD44-239ENST00000639002 FILIP1Q7Z7B0 1213 aa6.4□□□□□ -1.38
CD44-239ENST00000639002 C2orf69Q8N8R5 385 aa6.4□□□□□ -1.38
CD44-239ENST00000639002 SEMA4AQ9H3S1 761 aa6.4□□□□□ -1.38
CD44-239ENST00000639002 TRAF5O00463 557 aa6.39□□□□□ -1.39
CD44-239ENST00000639002 DNAJC8O75937 253 aaPredicted RBP6.39□□□□□ -1.39
CD44-239ENST00000639002 RAD17O75943 681 aa6.39□□□□□ -1.39
CD44-239ENST00000639002 GLRX3O76003 335 aaKnown RBP6.39□□□□□ -1.39
CD44-239ENST00000639002 IRF9Q00978 393 aa6.39□□□□□ -1.39
CD44-239ENST00000639002 USP30Q70CQ3 517 aa6.39□□□□□ -1.39
CD44-239ENST00000639002 OTOP2Q7RTS6 562 aa6.39□□□□□ -1.39
CD44-239ENST00000639002 HIPK4Q8NE63 616 aa6.39□□□□□ -1.39
CD44-239ENST00000639002 EDAQ92838 391 aa6.39□□□□□ -1.39
CD44-239ENST00000639002 M0R2C6 588 aa6.38□□□□□ -1.39
CD44-239ENST00000639002 CDC14BO60729 498 aa6.38□□□□□ -1.39
CD44-239ENST00000639002 TACR2P21452 398 aa6.38□□□□□ -1.39
CD44-239ENST00000639002 MRE11P49959 708 aa6.38□□□□□ -1.39
CD44-239ENST00000639002 STAT5BP51692 787 aa6.38□□□□□ -1.39
CD44-239ENST00000639002 HGFACQ04756 655 aa6.38□□□□□ -1.39
CD44-239ENST00000639002 BMS1Q14692 1282 aaKnown RBP6.38□□□□□ -1.39
CD44-239ENST00000639002 ZNF568Q3ZCX4 644 aa6.38□□□□□ -1.39
CD44-239ENST00000639002 FNDC3BQ53EP0 1204 aaKnown RBP6.38□□□□□ -1.39
CD44-239ENST00000639002 GRAMD4Q6IC98 578 aa6.38□□□□□ -1.39
CD44-239ENST00000639002 ZCCHC8Q6NZY4 707 aaKnown RBP6.38□□□□□ -1.39
CD44-239ENST00000639002 CC2D1AQ6P1N0 951 aaPredicted RBP6.38□□□□□ -1.39
CD44-239ENST00000639002 SREK1Q8WXA9 508 aaKnown RBP6.38□□□□□ -1.39
CD44-239ENST00000639002 ADOQ96SZ5 270 aa6.38□□□□□ -1.39
CD44-239ENST00000639002 PLA2G12BQ9BX93 195 aa6.38□□□□□ -1.39
CD44-239ENST00000639002 VPS11Q9H270 941 aa6.38□□□□□ -1.39
CD44-239ENST00000639002 SLC30A1Q9Y6M5 507 aa6.38□□□□□ -1.39
CD44-239ENST00000639002 PPP1R12AO14974 1030 aaPredicted RBP6.37□□□□□ -1.39
CD44-239ENST00000639002 MAFO75444 373 aaPredicted RBP6.37□□□□□ -1.39
CD44-239ENST00000639002 SDSP20132 328 aa6.37□□□□□ -1.39
CD44-239ENST00000639002 COMTP21964 271 aa6.37□□□□□ -1.39
CD44-239ENST00000639002 ACVRL1P37023 503 aa6.37□□□□□ -1.39
CD44-239ENST00000639002 ALDH6A1Q02252 535 aaKnown RBP6.37□□□□□ -1.39
CD44-239ENST00000639002 ZNF460Q14592 562 aa6.37□□□□□ -1.39
CD44-239ENST00000639002 PRKD1Q15139 912 aaPredicted RBP6.37□□□□□ -1.39
CD44-239ENST00000639002 MAMDC4Q6UXC1 1216 aa6.37□□□□□ -1.39
CD44-239ENST00000639002 GPR135Q8IZ08 494 aa6.37□□□□□ -1.39
CD44-239ENST00000639002 ERCC4Q92889 916 aaPredicted RBP6.37□□□□□ -1.39
CD44-239ENST00000639002 BOCQ9BWV1 1114 aa6.37□□□□□ -1.39
CD44-239ENST00000639002 OR10A2Q9H208 303 aa6.37□□□□□ -1.39
CD44-239ENST00000639002 C12orf65Q9H3J6 166 aaKnown RBP6.37□□□□□ -1.39
CD44-239ENST00000639002 AGO3Q9H9G7 860 aaKnown RBP6.37□□□□□ -1.39
CD44-239ENST00000639002 SAMD15Q9P1V8 674 aa6.37□□□□□ -1.39
CD44-239ENST00000639002 TNPO3Q9Y5L0 923 aaKnown RBP6.37□□□□□ -1.39
CD44-239ENST00000639002 ACO1P21399 889 aaKnown RBP6.36□□□□□ -1.39
CD44-239ENST00000639002 FOXL1Q12952 345 aa6.36□□□□□ -1.39
CD44-239ENST00000639002 HS1BP3Q53T59 392 aa6.36□□□□□ -1.39
CD44-239ENST00000639002 EXTL1Q92935 676 aa6.36□□□□□ -1.39
CD44-239ENST00000639002 OR14A2Q96R54 314 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms