RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 FAM117BQ6P1L5 589 aa16.72■□□□□ 0.27
LINC00643-205ENST00000623219 ARNTL2Q8WYA1 636 aa16.72■□□□□ 0.27
LINC00643-205ENST00000623219 TOP1MTQ969P6 601 aa16.72■□□□□ 0.27
LINC00643-205ENST00000623219 NAP1L4Q99733 375 aaKnown RBP16.72■□□□□ 0.27
LINC00643-205ENST00000623219 BRMS1Q9HCU9 246 aa16.72■□□□□ 0.27
LINC00643-205ENST00000623219 SPTBN5Q9NRC6 3674 aaKnown RBP16.72■□□□□ 0.27
LINC00643-205ENST00000623219 LINC01553A4QN01 128 aa16.71■□□□□ 0.27
LINC00643-205ENST00000623219 EPOPA6NHQ4 379 aa16.71■□□□□ 0.27
LINC00643-205ENST00000623219 SLC37A4O43826 429 aa16.71■□□□□ 0.27
LINC00643-205ENST00000623219 DTNBO60941 627 aa16.71■□□□□ 0.27
LINC00643-205ENST00000623219 OATP04181 439 aa16.71■□□□□ 0.27
LINC00643-205ENST00000623219 KRT2P35908 639 aa16.71■□□□□ 0.27
LINC00643-205ENST00000623219 PRKCEQ02156 737 aa16.71■□□□□ 0.27
LINC00643-205ENST00000623219 TMEM62Q0P6H9 643 aa16.71■□□□□ 0.27
LINC00643-205ENST00000623219 PPP4R3AQ6IN85 833 aa16.71■□□□□ 0.27
LINC00643-205ENST00000623219 B3GNT9Q6UX72 402 aa16.71■□□□□ 0.27
LINC00643-205ENST00000623219 PIK3AP1Q6ZUJ8 805 aa16.71■□□□□ 0.27
LINC00643-205ENST00000623219 SP7Q8TDD2 431 aaPredicted RBP16.71■□□□□ 0.27
LINC00643-205ENST00000623219 OXER1Q8TDS5 423 aa16.71■□□□□ 0.27
LINC00643-205ENST00000623219 CELF4Q9BZC1 486 aaKnown RBP16.71■□□□□ 0.27
LINC00643-205ENST00000623219 CERS4Q9HA82 394 aa16.71■□□□□ 0.27
LINC00643-205ENST00000623219 ZNF862O60290 1169 aa16.7■□□□□ 0.26
LINC00643-205ENST00000623219 POU3F3P20264 500 aaPredicted RBP16.7■□□□□ 0.26
LINC00643-205ENST00000623219 ERVK-21P61565 698 aa16.7■□□□□ 0.26
LINC00643-205ENST00000623219 ST3GAL1Q11201 340 aa16.7■□□□□ 0.26
LINC00643-205ENST00000623219 PAK2Q13177 524 aa16.7■□□□□ 0.26
LINC00643-205ENST00000623219 UGCGQ16739 394 aa16.7■□□□□ 0.26
LINC00643-205ENST00000623219 MIER3Q7Z3K6 550 aa16.7■□□□□ 0.26
LINC00643-205ENST00000623219 GJA10Q969M2 543 aa16.7■□□□□ 0.26
LINC00643-205ENST00000623219 TGS1Q96RS0 853 aaKnown RBP16.7■□□□□ 0.26
LINC00643-205ENST00000623219 YME1L1Q96TA2 773 aa16.7■□□□□ 0.26
LINC00643-205ENST00000623219 FTHL17Q9BXU8 183 aa16.7■□□□□ 0.26
LINC00643-205ENST00000623219 AGO3Q9H9G7 860 aaKnown RBP16.7■□□□□ 0.26
LINC00643-205ENST00000623219 LIMCH1Q9UPQ0 1083 aa16.7■□□□□ 0.26
LINC00643-205ENST00000623219 MAGEB2O15479 319 aa16.69■□□□□ 0.26
LINC00643-205ENST00000623219 GTPBP6O43824 516 aaPredicted RBP16.69■□□□□ 0.26
LINC00643-205ENST00000623219 CCNT1O60563 726 aaKnown RBP16.69■□□□□ 0.26
LINC00643-205ENST00000623219 JAK2O60674 1132 aa16.69■□□□□ 0.26
LINC00643-205ENST00000623219 MMP1P03956 469 aa16.69■□□□□ 0.26
LINC00643-205ENST00000623219 CD52P31358 61 aa16.69■□□□□ 0.26
LINC00643-205ENST00000623219 TRIM29Q14134 588 aa16.69■□□□□ 0.26
LINC00643-205ENST00000623219 FAM43BQ6ZT52 329 aaPredicted RBP16.69■□□□□ 0.26
LINC00643-205ENST00000623219 SPRED2Q7Z698 418 aa16.69■□□□□ 0.26
LINC00643-205ENST00000623219 KIAA0319LQ8IZA0 1049 aa16.69■□□□□ 0.26
LINC00643-205ENST00000623219 TNFRSF25Q93038 417 aa16.69■□□□□ 0.26
LINC00643-205ENST00000623219 FAM20AQ96MK3 541 aa16.69■□□□□ 0.26
LINC00643-205ENST00000623219 KCNMB3Q9NPA1 279 aa16.69■□□□□ 0.26
LINC00643-205ENST00000623219 TCF20Q9UGU0 1960 aaKnown RBP16.69■□□□□ 0.26
LINC00643-205ENST00000623219 CUL9Q8IWT3 2517 aa16.68■□□□□ 0.26
LINC00643-205ENST00000623219 RFXAPO00287 272 aa16.68■□□□□ 0.26
LINC00643-205ENST00000623219 TBX3O15119 743 aa16.68■□□□□ 0.26
LINC00643-205ENST00000623219 UPP2O95045 317 aa16.68■□□□□ 0.26
LINC00643-205ENST00000623219 RBM25P49756 843 aaKnown RBP16.68■□□□□ 0.26
LINC00643-205ENST00000623219 NR5A1Q13285 461 aa16.68■□□□□ 0.26
LINC00643-205ENST00000623219 PPP2R5CQ13362 524 aa16.68■□□□□ 0.26
LINC00643-205ENST00000623219 TRMT1LQ7Z2T5 733 aaKnown RBP16.68■□□□□ 0.26
LINC00643-205ENST00000623219 GDPD5Q8WTR4 605 aa16.68■□□□□ 0.26
LINC00643-205ENST00000623219 LINC01599Q8WXQ3 324 aa16.68■□□□□ 0.26
LINC00643-205ENST00000623219 SAMD11Q96NU1 681 aa16.68■□□□□ 0.26
LINC00643-205ENST00000623219 KIF2CQ99661 725 aa16.68■□□□□ 0.26
LINC00643-205ENST00000623219 NRBP2Q9NSY0 501 aa16.68■□□□□ 0.26
LINC00643-205ENST00000623219 VAV3Q9UKW4 847 aa16.68■□□□□ 0.26
LINC00643-205ENST00000623219 PADI3Q9ULW8 664 aa16.68■□□□□ 0.26
LINC00643-205ENST00000623219 MTCH2Q9Y6C9 303 aa16.68■□□□□ 0.26
LINC00643-205ENST00000623219 BRWD1Q9NSI6 2320 aa16.67■□□□□ 0.26
LINC00643-205ENST00000623219 LPXNO60711 386 aa16.67■□□□□ 0.26
LINC00643-205ENST00000623219 GRB10Q13322 594 aa16.67■□□□□ 0.26
LINC00643-205ENST00000623219 EARS2Q5JPH6 523 aaKnown RBP16.67■□□□□ 0.26
LINC00643-205ENST00000623219 ODR4Q5SWX8 454 aa16.67■□□□□ 0.26
LINC00643-205ENST00000623219 CCDC83Q8IWF9 413 aa16.67■□□□□ 0.26
LINC00643-205ENST00000623219 METTL13Q8N6R0 699 aa16.67■□□□□ 0.26
LINC00643-205ENST00000623219 LINC01465Q8N7H1 131 aa16.67■□□□□ 0.26
LINC00643-205ENST00000623219 PPM1EQ8WY54 764 aa16.67■□□□□ 0.26
LINC00643-205ENST00000623219 RC3H2Q9HBD1 1191 aaKnown RBP16.67■□□□□ 0.26
LINC00643-205ENST00000623219 SEPT9Q9UHD8 586 aaPredicted RBP16.67■□□□□ 0.26
LINC00643-205ENST00000623219 MTUS1Q9ULD2 1270 aa16.67■□□□□ 0.26
LINC00643-205ENST00000623219 ADGRA3Q8IWK6 1321 aa16.67■□□□□ 0.26
LINC00643-205ENST00000623219 FAM205CA6NFA0 338 aa16.66■□□□□ 0.26
LINC00643-205ENST00000623219 ENPP3O14638 875 aa16.66■□□□□ 0.26
LINC00643-205ENST00000623219 TMOD1P28289 359 aa16.66■□□□□ 0.26
LINC00643-205ENST00000623219 CLCN3P51790 818 aa16.66■□□□□ 0.26
LINC00643-205ENST00000623219 CRYBB1P53674 252 aaPredicted RBP16.66■□□□□ 0.26
LINC00643-205ENST00000623219 KRT40Q6A162 431 aa16.66■□□□□ 0.26
LINC00643-205ENST00000623219 DIS3L2Q8IYB7 885 aaKnown RBP16.66■□□□□ 0.26
LINC00643-205ENST00000623219 ZNF710Q8N1W2 664 aa16.66■□□□□ 0.26
LINC00643-205ENST00000623219 MICALL1Q8N3F8 863 aa16.66■□□□□ 0.26
LINC00643-205ENST00000623219 FBXO22Q8NEZ5 403 aa16.66■□□□□ 0.26
LINC00643-205ENST00000623219 ZSCAN31Q96LW9 406 aaPredicted RBP16.66■□□□□ 0.26
LINC00643-205ENST00000623219 MAP7D2Q96T17 732 aa16.66■□□□□ 0.26
LINC00643-205ENST00000623219 LLPHQ9BRT6 129 aaKnown RBP16.66■□□□□ 0.26
LINC00643-205ENST00000623219 C17orf80Q9BSJ5 609 aa16.66■□□□□ 0.26
LINC00643-205ENST00000623219 TSPYL2Q9H2G4 693 aaPredicted RBP16.66■□□□□ 0.26
LINC00643-205ENST00000623219 SH2B1Q9NRF2 756 aaPredicted RBP16.66■□□□□ 0.26
LINC00643-205ENST00000623219 LMCD1Q9NZU5 365 aa16.66■□□□□ 0.26
LINC00643-205ENST00000623219 THEGQ9P2T0 379 aa16.66■□□□□ 0.26
LINC00643-205ENST00000623219 GINS2Q9Y248 185 aa16.66■□□□□ 0.26
LINC00643-205ENST00000623219 MUC3AQ02505 3323 aa16.66■□□□□ 0.26
LINC00643-205ENST00000623219 GPR32O75388 356 aa16.65■□□□□ 0.26
LINC00643-205ENST00000623219 RPS6KA5O75582 802 aa16.65■□□□□ 0.26
LINC00643-205ENST00000623219 VTNP04004 478 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms