RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 DHX15O43143 795 aaKnown RBP21.52■■□□□ 1.03
CDX1-202ENST00000616154 PRPF3O43395 683 aaKnown RBP21.52■■□□□ 1.03
CDX1-202ENST00000616154 SCG2P13521 617 aa21.52■■□□□ 1.03
CDX1-202ENST00000616154 PDIA3P30101 505 aaKnown RBP21.52■■□□□ 1.03
CDX1-202ENST00000616154 SSTR3P32745 418 aaPredicted RBP21.52■■□□□ 1.03
CDX1-202ENST00000616154 LTBRP36941 435 aa21.52■■□□□ 1.03
CDX1-202ENST00000616154 PKN1Q16512 942 aa21.52■■□□□ 1.03
CDX1-202ENST00000616154 EP400NLQ6ZTU2 488 aa21.52■■□□□ 1.03
CDX1-202ENST00000616154 FAM122AQ96E09 287 aa21.52■■□□□ 1.03
CDX1-202ENST00000616154 ZMYND12Q9H0C1 365 aa21.52■■□□□ 1.03
CDX1-202ENST00000616154 TMX1Q9H3N1 280 aa21.52■■□□□ 1.03
CDX1-202ENST00000616154 ZNF302Q9NR11 478 aa21.52■■□□□ 1.03
CDX1-202ENST00000616154 NAP1L2Q9ULW6 460 aaPredicted RBP21.52■■□□□ 1.03
CDX1-202ENST00000616154 PLAGL2Q9UPG8 496 aa21.52■■□□□ 1.03
CDX1-202ENST00000616154 HCN4Q9Y3Q4 1203 aa21.52■■□□□ 1.03
CDX1-202ENST00000616154 ARIH1Q9Y4X5 557 aaPredicted RBP21.52■■□□□ 1.03
CDX1-202ENST00000616154 CYP46A1Q9Y6A2 500 aa21.52■■□□□ 1.03
CDX1-202ENST00000616154 FNDC1Q4ZHG4 1894 aaPredicted RBP21.51■■□□□ 1.03
CDX1-202ENST00000616154 IPO5O00410 1097 aaKnown RBP21.51■■□□□ 1.03
CDX1-202ENST00000616154 IFNAR1P17181 557 aa21.51■■□□□ 1.03
CDX1-202ENST00000616154 KLRC1P26715 233 aa21.51■■□□□ 1.03
CDX1-202ENST00000616154 ANAPC15P60006 121 aa21.51■■□□□ 1.03
CDX1-202ENST00000616154 HYAL1Q12794 435 aa21.51■■□□□ 1.03
CDX1-202ENST00000616154 NAALADL2Q58DX5 795 aa21.51■■□□□ 1.03
CDX1-202ENST00000616154 ZNF484Q5JVG2 852 aa21.51■■□□□ 1.03
CDX1-202ENST00000616154 MCTP2Q6DN12 878 aa21.51■■□□□ 1.03
CDX1-202ENST00000616154 MIS18BP1Q6P0N0 1132 aa21.51■■□□□ 1.03
CDX1-202ENST00000616154 RNF26Q9BY78 433 aaPredicted RBP21.51■■□□□ 1.03
CDX1-202ENST00000616154 PRKAG3Q9UGI9 489 aa21.51■■□□□ 1.03
CDX1-202ENST00000616154 FAM86C2PA6NEL3 165 aa21.5■■□□□ 1.03
CDX1-202ENST00000616154 SETQ01105 290 aaPredicted RBP21.5■■□□□ 1.03
CDX1-202ENST00000616154 CAMK1Q14012 370 aa21.5■■□□□ 1.03
CDX1-202ENST00000616154 PDXDC2PQ6P474 469 aa21.5■■□□□ 1.03
CDX1-202ENST00000616154 CCDC12Q8WUD4 166 aaPredicted RBP21.5■■□□□ 1.03
CDX1-202ENST00000616154 ZNF274Q96GC6 653 aaPredicted RBP21.5■■□□□ 1.03
CDX1-202ENST00000616154 C6orf50Q9HD87 102 aa21.5■■□□□ 1.03
CDX1-202ENST00000616154 ERVK-5Q9HDB9 667 aa21.5■■□□□ 1.03
CDX1-202ENST00000616154 ALG13Q9NP73 1137 aaKnown RBP21.5■■□□□ 1.03
CDX1-202ENST00000616154 PLXNA4Q9HCM2 1894 aa21.49■■□□□ 1.03
CDX1-202ENST00000616154 ZBTB42B2RXF5 422 aa21.49■■□□□ 1.03
CDX1-202ENST00000616154 ZP2Q05996 745 aa21.49■■□□□ 1.03
CDX1-202ENST00000616154 TMEM266Q2M3C6 531 aa21.49■■□□□ 1.03
CDX1-202ENST00000616154 SWSAP1Q6NVH7 229 aa21.49■■□□□ 1.03
CDX1-202ENST00000616154 KIAA0319LQ8IZA0 1049 aa21.49■■□□□ 1.03
CDX1-202ENST00000616154 REXO1Q8N1G1 1221 aaKnown RBP21.49■■□□□ 1.03
CDX1-202ENST00000616154 ZNF577Q9BSK1 485 aa21.49■■□□□ 1.03
CDX1-202ENST00000616154 TBC1D22BQ9NU19 505 aa21.49■■□□□ 1.03
CDX1-202ENST00000616154 ADAMTS3O15072 1205 aa21.48■■□□□ 1.03
CDX1-202ENST00000616154 RPS6KA5O75582 802 aa21.48■■□□□ 1.03
CDX1-202ENST00000616154 ITGB1P05556 798 aa21.48■■□□□ 1.03
CDX1-202ENST00000616154 ALADP13716 330 aa21.48■■□□□ 1.03
CDX1-202ENST00000616154 ATP4AP20648 1035 aa21.48■■□□□ 1.03
CDX1-202ENST00000616154 SARSP49591 514 aaKnown RBP21.48■■□□□ 1.03
CDX1-202ENST00000616154 NFX1Q12986 1120 aaKnown RBP21.48■■□□□ 1.03
CDX1-202ENST00000616154 PAN2Q504Q3 1202 aaKnown RBP21.48■■□□□ 1.03
CDX1-202ENST00000616154 ZNF746Q6NUN9 644 aaPredicted RBP21.48■■□□□ 1.03
CDX1-202ENST00000616154 BBXQ8WY36 941 aaPredicted RBP21.48■■□□□ 1.03
CDX1-202ENST00000616154 BACH2Q9BYV9 841 aa21.48■■□□□ 1.03
CDX1-202ENST00000616154 UPF3BQ9BZI7 483 aaKnown RBP21.48■■□□□ 1.03
CDX1-202ENST00000616154 LRFN2Q9ULH4 789 aa21.48■■□□□ 1.03
CDX1-202ENST00000616154 GINS2Q9Y248 185 aa21.48■■□□□ 1.03
CDX1-202ENST00000616154 NOC2LQ9Y3T9 749 aaKnown RBP21.48■■□□□ 1.03
CDX1-202ENST00000616154 C19orf67A6NJJ6 358 aa21.47■■□□□ 1.03
CDX1-202ENST00000616154 EIF5BO60841 1220 aaKnown RBP21.47■■□□□ 1.03
CDX1-202ENST00000616154 DNAJB1P25685 340 aa21.47■■□□□ 1.03
CDX1-202ENST00000616154 GNA11P29992 359 aa21.47■■□□□ 1.03
CDX1-202ENST00000616154 GATMP50440 423 aa21.47■■□□□ 1.03
CDX1-202ENST00000616154 DLX2Q07687 328 aaPredicted RBP21.47■■□□□ 1.03
CDX1-202ENST00000616154 ODR4Q5SWX8 454 aa21.47■■□□□ 1.03
CDX1-202ENST00000616154 ADHFE1Q8IWW8 467 aa21.47■■□□□ 1.03
CDX1-202ENST00000616154 SMAP1Q8IYB5 467 aaPredicted RBP21.47■■□□□ 1.03
CDX1-202ENST00000616154 KLHL23Q8NBE8 558 aa21.47■■□□□ 1.03
CDX1-202ENST00000616154 SPPL3Q8TCT6 385 aa21.47■■□□□ 1.03
CDX1-202ENST00000616154 TMEM40Q8WWA1 233 aa21.47■■□□□ 1.03
CDX1-202ENST00000616154 CDHR5Q9HBB8 845 aa21.47■■□□□ 1.03
CDX1-202ENST00000616154 C1orf112Q9NSG2 853 aa21.47■■□□□ 1.03
CDX1-202ENST00000616154 MAFBQ9Y5Q3 323 aaPredicted RBP21.47■■□□□ 1.03
CDX1-202ENST00000616154 C5orf42Q9H799 3197 aa21.47■■□□□ 1.03
CDX1-202ENST00000616154 PRR33A8MZF0 331 aa21.46■■□□□ 1.03
CDX1-202ENST00000616154 MGEA5O60502 916 aa21.46■■□□□ 1.03
CDX1-202ENST00000616154 TBX10O75333 385 aa21.46■■□□□ 1.03
CDX1-202ENST00000616154 CSPG5O95196 566 aa21.46■■□□□ 1.03
CDX1-202ENST00000616154 C22orf31O95567 290 aa21.46■■□□□ 1.03
CDX1-202ENST00000616154 CIITAP33076 1130 aa21.46■■□□□ 1.03
CDX1-202ENST00000616154 GTF2F1P35269 517 aaKnown RBP eCLIP21.46■■□□□ 1.03
CDX1-202ENST00000616154 SMAD2Q15796 467 aaKnown RBP21.46■■□□□ 1.03
CDX1-202ENST00000616154 PHKBQ93100 1093 aa21.46■■□□□ 1.03
CDX1-202ENST00000616154 PPP2R3CQ969Q6 453 aa21.46■■□□□ 1.03
CDX1-202ENST00000616154 UIMC1Q96RL1 719 aa21.46■■□□□ 1.03
CDX1-202ENST00000616154 RGS18Q9NS28 235 aa21.46■■□□□ 1.03
CDX1-202ENST00000616154 RNF216Q9NWF9 866 aaPredicted RBP21.46■■□□□ 1.03
CDX1-202ENST00000616154 MBTPS2O43462 519 aa21.45■■□□□ 1.02
CDX1-202ENST00000616154 PSAPP07602 524 aa21.45■■□□□ 1.02
CDX1-202ENST00000616154 ADAM15Q13444 863 aa21.45■■□□□ 1.02
CDX1-202ENST00000616154 SMAD4Q13485 552 aaKnown RBP21.45■■□□□ 1.02
CDX1-202ENST00000616154 CKAP2LQ8IYA6 745 aa21.45■■□□□ 1.02
CDX1-202ENST00000616154 FAM177A1Q8N128 213 aaPredicted RBP21.45■■□□□ 1.02
CDX1-202ENST00000616154 BICD2Q8TD16 824 aa21.45■■□□□ 1.02
CDX1-202ENST00000616154 ADAM2Q99965 735 aa21.45■■□□□ 1.02
CDX1-202ENST00000616154 IGFLR1Q9H665 355 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms