RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ORC4O43929 436 aa15.08■□□□□ 0.01
CPSF1-212ENST00000616140 ZRANB2O95218 330 aaKnown RBP eCLIP15.08■□□□□ 0.016e-7■■■■□ 22.1
CPSF1-212ENST00000616140 CPP00450 1065 aa15.08■□□□□ 0.01
CPSF1-212ENST00000616140 ASNSP08243 561 aa15.08■□□□□ 0.01
CPSF1-212ENST00000616140 ADCY2Q08462 1091 aa15.08■□□□□ 0.01
CPSF1-212ENST00000616140 ZNF211Q13398 564 aaPredicted RBP15.08■□□□□ 0.01
CPSF1-212ENST00000616140 RASIP1Q5U651 963 aa15.08■□□□□ 0.01
CPSF1-212ENST00000616140 SCARA5Q6ZMJ2 495 aa15.08■□□□□ 0.01
CPSF1-212ENST00000616140 HPS3Q969F9 1004 aa15.08■□□□□ 0.01
CPSF1-212ENST00000616140 FAM20AQ96MK3 541 aa15.08■□□□□ 0.01
CPSF1-212ENST00000616140 SPC25Q9HBM1 224 aa15.08■□□□□ 0.01
CPSF1-212ENST00000616140 MORC2Q9Y6X9 1032 aaPredicted RBP15.08■□□□□ 0.01
CPSF1-212ENST00000616140 QRICH1Q2TAL8 776 aa15.08■□□□□ 0
CPSF1-212ENST00000616140 TMED8Q6PL24 325 aaPredicted RBP15.08■□□□□ 0
CPSF1-212ENST00000616140 DCLK2Q8N568 766 aa15.08■□□□□ 0
CPSF1-212ENST00000616140 ZNF341Q9BYN7 854 aa15.08■□□□□ 0
CPSF1-212ENST00000616140 TRIM9Q9C026 710 aa15.08■□□□□ 0
CPSF1-212ENST00000616140 ADAM22Q9P0K1 906 aa15.08■□□□□ 0
CPSF1-212ENST00000616140 SRGAP2CP0DJJ0 459 aa15.08■□□□□ 0
CPSF1-212ENST00000616140 ECE1P42892 770 aa15.08■□□□□ 0
CPSF1-212ENST00000616140 FXR1P51114 621 aaKnown RBP eCLIP15.08■□□□□ 0
CPSF1-212ENST00000616140 DBN1Q16643 649 aa15.08■□□□□ 0
CPSF1-212ENST00000616140 PPP1R2P3Q6NXS1 205 aa15.08■□□□□ 0
CPSF1-212ENST00000616140 DARS2Q6PI48 645 aaKnown RBP15.08■□□□□ 0
CPSF1-212ENST00000616140 DNAAF3Q8N9W5 541 aa15.08■□□□□ 0
CPSF1-212ENST00000616140 NEDD1Q8NHV4 660 aa15.08■□□□□ 0
CPSF1-212ENST00000616140 HEMGNQ9BXL5 484 aa15.08■□□□□ 0
CPSF1-212ENST00000616140 SLC5A4Q9NY91 659 aa15.08■□□□□ 0
CPSF1-212ENST00000616140 FDPSP14324 419 aaKnown RBP15.07■□□□□ 0
CPSF1-212ENST00000616140 GARSP41250 739 aaKnown RBP15.07■□□□□ 0
CPSF1-212ENST00000616140 OR6B2Q6IFH4 312 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 MYCBPQ99417 103 aaPredicted RBP15.07■□□□□ 0
CPSF1-212ENST00000616140 CDC42BPGQ6DT37 1551 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 NPR1P16066 1061 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 GUCY2CP25092 1073 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 CRKP46108 304 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 RNASELQ05823 741 aaKnown RBP15.07■□□□□ 0
CPSF1-212ENST00000616140 ANKRD40Q6AI12 368 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 ZNF746Q6NUN9 644 aaPredicted RBP15.07■□□□□ 0
CPSF1-212ENST00000616140 PADI6Q6TGC4 694 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 TBC1D1Q86TI0 1168 aaPredicted RBP15.07■□□□□ 0
CPSF1-212ENST00000616140 SPATA4Q8NEY3 305 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 ACTR5Q9H9F9 607 aaPredicted RBP15.07■□□□□ 0
CPSF1-212ENST00000616140 SYNGAP1Q96PV0 1343 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 COL15A1P39059 1388 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 MADDQ8WXG6 1647 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 A0A1B0GTH6 734 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 F5H6K3 240 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 MMEP08473 750 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 KLRC3Q07444 240 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 NKX1-1Q15270 411 aaPredicted RBP15.07■□□□□ 0
CPSF1-212ENST00000616140 ZNF449Q6P9G9 518 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 KCTD6Q8NC69 237 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 MCUQ8NE86 351 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 GSDMBQ8TAX9 411 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 PYROXD1Q8WU10 500 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 HAUS2Q9NVX0 235 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 ERCC6L2Q5T890 1561 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 MROH7-TTC4A0A0A0MT08 1334 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 ANTXR2P58335 489 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 RBBP5Q15291 538 aaKnown RBP15.07■□□□□ 0
CPSF1-212ENST00000616140 RAPH1Q70E73 1250 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 CCHCR1Q8TD31 782 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 COG1Q8WTW3 980 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 DCAF4Q8WV16 495 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 MSTO1Q9BUK6 570 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 CCDC68Q9H2F9 335 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 TUBE1Q9UJT0 475 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 CAPN11Q9UMQ6 739 aa15.07■□□□□ 0
CPSF1-212ENST00000616140 PSAPP07602 524 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 RFC1P35251 1148 aaPredicted RBP15.06■□□□□ 0
CPSF1-212ENST00000616140 STAT3P40763 770 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 BANK1Q8NDB2 785 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 NGRNQ9NPE2 291 aaKnown RBP15.06■□□□□ 0
CPSF1-212ENST00000616140 MAGOHP61326 146 aaKnown RBP15.06■□□□□ 0
CPSF1-212ENST00000616140 GPC5P78333 572 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 KCNB1Q14721 858 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 DRAP1Q14919 205 aaPredicted RBP15.06■□□□□ 0
CPSF1-212ENST00000616140 RSRC2Q7L4I2 434 aaKnown RBP15.06■□□□□ 0
CPSF1-212ENST00000616140 GLYCTKQ8IVS8 523 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 THNSL1Q8IYQ7 743 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 DCPSQ96C86 337 aaKnown RBP15.06■□□□□ 0
CPSF1-212ENST00000616140 THOC1Q96FV9 657 aaKnown RBP15.06■□□□□ 0
CPSF1-212ENST00000616140 RMDN3Q96TC7 470 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 IFT122Q9HBG6 1241 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 MAGED2Q9UNF1 606 aaPredicted RBP15.06■□□□□ 0
CPSF1-212ENST00000616140 CCND2P30279 289 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 KCNJ6P48051 423 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 PCGF5Q86SE9 256 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 TADA2BQ86TJ2 420 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 NLRP4Q96MN2 994 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 CCSER1Q9C0I3 900 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 A0A0G2JLW4 131 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 XPOTO43592 962 aaKnown RBP15.06■□□□□ 0
CPSF1-212ENST00000616140 CCDC93Q567U6 631 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 C12orf60Q5U649 245 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 FAM47EQ6ZV65 393 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 CENPUQ71F23 418 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 ERICH1Q86X53 443 aa15.06■□□□□ 0
CPSF1-212ENST00000616140 DYDC2Q96IM9 177 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms