RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 TMC4Q7Z404 712 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 KIF2BQ8N4N8 673 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 SPATA4Q8NEY3 305 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 ZSWIM6Q9HCJ5 1215 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 POLR3EQ9NVU0 708 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.3□□□□□ -1.562e-6■■■□□ 18.3
VPS13D-213ENST00000613099 SNX14Q9Y5W7 946 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 IQGAP1P46940 1657 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 C16orf96A6NNT2 1141 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 CCDC188H7C350 402 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 WFS1O76024 890 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 ZBED6P86452 979 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 SLC7A5Q01650 507 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 ZNF180Q9UJW8 692 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 ATP9AO75110 1047 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 MFAP3LO75121 409 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 ABL2P42684 1182 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 SCNN1BP51168 640 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 MARK2Q7KZI7 788 aaKnown RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 VPS37DQ86XT2 251 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 TRMT2AQ8IZ69 625 aaKnown RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 PPCSQ9HAB8 311 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 SCAF8Q9UPN6 1271 aaKnown RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 NBPF26B4DH59 902 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 SLC26A4O43511 780 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 SCRN3Q0VDG4 424 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 TBCCQ15814 346 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 DPCR1Q3MIW9 517 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 RBM20Q5T481 1227 aaKnown RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 RASGRP2Q7LDG7 609 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 UBE3BQ7Z3V4 1068 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 PHC3Q8NDX5 983 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 RXFP1Q9HBX9 757 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 STK17AQ9UEE5 414 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 CLTCQ00610 1675 aaKnown RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 KLHL30Q0D2K2 578 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 XRCC4Q13426 336 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 GSTA3Q16772 222 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 NCCRP1Q6ZVX7 275 aaPredicted RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 KLHL4Q9C0H6 718 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 SHOX2O60902 331 aaPredicted RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 MTRF1O75570 445 aaKnown RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 JAK1P23458 1154 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 LRPAP1P30533 357 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 SUZ12Q15022 739 aaKnown RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 RIC3Q7Z5B4 369 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 ZNF24P17028 368 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 DR1Q01658 176 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 SGO2Q562F6 1265 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 BOLA2Q9H3K6 86 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 MRPL39Q9NYK5 338 aaKnown RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 ANKFY1Q9P2R3 1169 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 DISP1Q96F81 1524 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 CCNCP24863 283 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 DNAJC3Q13217 504 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 PNOCQ13519 176 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 LETM2Q2VYF4 491 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 FSCBQ5H9T9 825 aa5.3□□□□□ -1.56
VPS13D-213ENST00000613099 C16orf71Q8IYS4 520 aaPredicted RBP5.3□□□□□ -1.56
VPS13D-213ENST00000613099 PODXLO00592 558 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 SPOPO43791 374 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 SNX2O60749 519 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 HAUS5O94927 633 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 BAG3O95817 575 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 NDUFA8P51970 172 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 ADCK5Q3MIX3 580 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 C1orf228Q6PIY5 440 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 NOP9Q86U38 636 aaKnown RBP5.29□□□□□ -1.56
VPS13D-213ENST00000613099 CNBD1Q8NA66 436 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 AK5Q9Y6K8 562 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 MYH7BA7E2Y1 1941 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 MAGI3Q5TCQ9 1506 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 VWA5AO00534 786 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 IDO1P14902 403 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 SLC34A1Q06495 639 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 TRIM67Q6ZTA4 783 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 KRT27Q7Z3Y8 459 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 SENP1Q9P0U3 644 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 WARS2Q9UGM6 360 aaKnown RBP5.29□□□□□ -1.56
VPS13D-213ENST00000613099 DLGAP3O95886 979 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 IGHMBP2P38935 993 aaKnown RBP5.29□□□□□ -1.56
VPS13D-213ENST00000613099 BNC1Q01954 994 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 RAPGEF1Q13905 1077 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 ARMC3Q5W041 872 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 ARHGEF10LQ9HCE6 1279 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 SCAF11Q99590 1463 aaKnown RBP5.29□□□□□ -1.56
VPS13D-213ENST00000613099 IL12RB1P42701 662 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 TMEM67Q5HYA8 995 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 TCAIMQ8N3R3 496 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 DACH2Q96NX9 599 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 MSH6P52701 1360 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 GOLGA8MH3BSY2 632 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 CAPN9O14815 690 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 ADCK1Q86TW2 530 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 CUEDC2Q9H467 287 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 FRMPD1Q5SYB0 1578 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 PLTPP55058 493 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 CRLF3Q8IUI8 442 aa5.29□□□□□ -1.56
VPS13D-213ENST00000613099 CNKSR1Q969H4 720 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms