RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 ZBTB42B2RXF5 422 aa18.5■□□□□ 0.55
SHKBP1-219ENST00000599575 TREHO43280 583 aa18.5■□□□□ 0.55
SHKBP1-219ENST00000599575 CUTAO60888 179 aa18.5■□□□□ 0.55
SHKBP1-219ENST00000599575 MED24O75448 989 aa18.5■□□□□ 0.55
SHKBP1-219ENST00000599575 TMOD1P28289 359 aa18.5■□□□□ 0.55
SHKBP1-219ENST00000599575 MARCKSP29966 332 aaPredicted RBP18.5■□□□□ 0.55
SHKBP1-219ENST00000599575 TBC1D8BQ0IIM8 1120 aa18.5■□□□□ 0.55
SHKBP1-219ENST00000599575 MTHFD1LQ6UB35 978 aa18.5■□□□□ 0.55
SHKBP1-219ENST00000599575 C7orf61Q8IZ16 206 aa18.5■□□□□ 0.55
SHKBP1-219ENST00000599575 SLC7A3Q8WY07 619 aa18.5■□□□□ 0.55
SHKBP1-219ENST00000599575 CALML4Q96GE6 196 aa18.5■□□□□ 0.55
SHKBP1-219ENST00000599575 CDK5RAP3Q96JB5 506 aa18.5■□□□□ 0.55
SHKBP1-219ENST00000599575 CTAGE1Q96RT6 745 aa18.5■□□□□ 0.55
SHKBP1-219ENST00000599575 HIPK3Q9H422 1215 aa18.5■□□□□ 0.55
SHKBP1-219ENST00000599575 DNM3Q9UQ16 869 aa18.5■□□□□ 0.55
SHKBP1-219ENST00000599575 C22orf31O95567 290 aa18.49■□□□□ 0.55
SHKBP1-219ENST00000599575 TIMP1P01033 207 aa18.49■□□□□ 0.55
SHKBP1-219ENST00000599575 RAG1P15918 1043 aa18.49■□□□□ 0.55
SHKBP1-219ENST00000599575 KLRC1P26715 233 aa18.49■□□□□ 0.55
SHKBP1-219ENST00000599575 CABP7Q86V35 215 aa18.49■□□□□ 0.55
SHKBP1-219ENST00000599575 CEP170P1Q96L14 293 aa18.49■□□□□ 0.55
SHKBP1-219ENST00000599575 SPATA32Q96LK8 384 aa18.49■□□□□ 0.55
SHKBP1-219ENST00000599575 CCDC43Q96MW1 224 aaKnown RBP18.49■□□□□ 0.55
SHKBP1-219ENST00000599575 NOC4LQ9BVI4 516 aaKnown RBP18.49■□□□□ 0.55
SHKBP1-219ENST00000599575 CSRNP2Q9H175 543 aa18.49■□□□□ 0.55
SHKBP1-219ENST00000599575 WRAP73Q9P2S5 460 aaPredicted RBP18.49■□□□□ 0.55
SHKBP1-219ENST00000599575 IGKV6-21A0A0C4DH24 114 aa18.48■□□□□ 0.55
SHKBP1-219ENST00000599575 MAFO75444 373 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-219ENST00000599575 DGAT1O75907 488 aa18.48■□□□□ 0.55
SHKBP1-219ENST00000599575 CYP2C9P11712 490 aa18.48■□□□□ 0.55
SHKBP1-219ENST00000599575 NCLP19338 710 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-219ENST00000599575 ME1P48163 572 aa18.48■□□□□ 0.55
SHKBP1-219ENST00000599575 DNM2P50570 870 aa18.48■□□□□ 0.55
SHKBP1-219ENST00000599575 IGBP1P78318 339 aa18.48■□□□□ 0.55
SHKBP1-219ENST00000599575 HIC1Q14526 733 aa18.48■□□□□ 0.55
SHKBP1-219ENST00000599575 CEP89Q96ST8 783 aa18.48■□□□□ 0.55
SHKBP1-219ENST00000599575 MMTAG2Q9BU76 263 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-219ENST00000599575 CCDC39Q9UFE4 941 aa18.48■□□□□ 0.55
SHKBP1-219ENST00000599575 KIAA1024Q9UPX6 916 aa18.48■□□□□ 0.55
SHKBP1-219ENST00000599575 RFC2P35250 354 aa18.47■□□□□ 0.55
SHKBP1-219ENST00000599575 RARRES1P49788 294 aa18.47■□□□□ 0.55
SHKBP1-219ENST00000599575 CSPP1Q1MSJ5 1256 aa18.47■□□□□ 0.55
SHKBP1-219ENST00000599575 FOXD4L6Q3SYB3 417 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-219ENST00000599575 MTERF2Q49AM1 385 aa18.47■□□□□ 0.55
SHKBP1-219ENST00000599575 XKR9Q5GH70 373 aa18.47■□□□□ 0.55
SHKBP1-219ENST00000599575 IER5Q5VY09 327 aa18.47■□□□□ 0.55
SHKBP1-219ENST00000599575 POTEGQ6S5H5 508 aa18.47■□□□□ 0.55
SHKBP1-219ENST00000599575 FOXD4L3Q6VB84 417 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-219ENST00000599575 LEO1Q8WVC0 666 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-219ENST00000599575 PYM1Q9BRP8 204 aaKnown RBP18.47■□□□□ 0.55
SHKBP1-219ENST00000599575 DHX33Q9H6R0 707 aaKnown RBP18.47■□□□□ 0.55
SHKBP1-219ENST00000599575 PRDM5Q9NQX1 630 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-219ENST00000599575 DDX19AQ9NUU7 478 aaKnown RBP18.47■□□□□ 0.55
SHKBP1-219ENST00000599575 KCND2Q9NZV8 630 aa18.47■□□□□ 0.55
SHKBP1-219ENST00000599575 TRIM43BA6NCK2 446 aa18.46■□□□□ 0.55
SHKBP1-219ENST00000599575 PP2D1A8MPX8 630 aa18.46■□□□□ 0.55
SHKBP1-219ENST00000599575 EYA4O95677 639 aa18.46■□□□□ 0.55
SHKBP1-219ENST00000599575 SELPP16109 830 aa18.46■□□□□ 0.55
SHKBP1-219ENST00000599575 POLGP54098 1239 aaPredicted RBP18.46■□□□□ 0.55
SHKBP1-219ENST00000599575 ZNF200P98182 395 aaPredicted RBP18.46■□□□□ 0.55
SHKBP1-219ENST00000599575 TRIM71Q2Q1W2 868 aaKnown RBP18.46■□□□□ 0.55
SHKBP1-219ENST00000599575 MFSD5Q6N075 450 aa18.46■□□□□ 0.55
SHKBP1-219ENST00000599575 TRMT1LQ7Z2T5 733 aaKnown RBP18.46■□□□□ 0.55
SHKBP1-219ENST00000599575 TMEM199Q8N511 208 aa18.46■□□□□ 0.55
SHKBP1-219ENST00000599575 RASSF8Q8NHQ8 419 aa18.46■□□□□ 0.55
SHKBP1-219ENST00000599575 TCP11Q8WWU5 503 aa18.46■□□□□ 0.55
SHKBP1-219ENST00000599575 TRIM43Q96BQ3 446 aaPredicted RBP18.46■□□□□ 0.55
SHKBP1-219ENST00000599575 MAP7D2Q96T17 732 aa18.46■□□□□ 0.55
SHKBP1-219ENST00000599575 LBHD1Q9BQE6 289 aaPredicted RBP18.46■□□□□ 0.55
SHKBP1-219ENST00000599575 M0QZ92 97 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 PFKMP08237 780 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 CKBP12277 381 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 CDC25AP30304 524 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 GRIN1Q05586 938 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 TMEM119Q4V9L6 283 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 FAM26DQ5JW98 314 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 AXDND1Q5T1B0 1012 aaPredicted RBP18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 ADALQ6DHV7 355 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 EFCAB12Q6NXP0 572 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 CCDC73Q6ZRK6 1079 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 SH3RF1Q7Z6J0 888 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 KIAA0319LQ8IZA0 1049 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 LINC01465Q8N7H1 131 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 MCPH1Q8NEM0 835 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 PIGOQ8TEQ8 1089 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 PPP1R13LQ8WUF5 828 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 TRAPPC12Q8WVT3 735 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 DHX38Q92620 1227 aaKnown RBP18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 SYMPKQ92797 1274 aaKnown RBP18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 TIPINQ9BVW5 301 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 STK17AQ9UEE5 414 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 PCDHA7Q9UN72 937 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 SQORQ9Y6N5 450 aa18.45■□□□□ 0.54
SHKBP1-219ENST00000599575 ARHGEF35A5YM69 484 aa18.44■□□□□ 0.54
SHKBP1-219ENST00000599575 ASAP2O43150 1006 aa18.44■□□□□ 0.54
SHKBP1-219ENST00000599575 THPOP40225 353 aa18.44■□□□□ 0.54
SHKBP1-219ENST00000599575 NPEPPSP55786 919 aa18.44■□□□□ 0.54
SHKBP1-219ENST00000599575 GRB10Q13322 594 aa18.44■□□□□ 0.54
SHKBP1-219ENST00000599575 PLA2G4FQ68DD2 849 aa18.44■□□□□ 0.54
SHKBP1-219ENST00000599575 LRRC8DQ7L1W4 858 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms