RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	PHKB	Q93100	1093 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	FAM122A	Q96E09	287 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	PLVAP	Q9BX97	442 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	IGFLR1	Q9H665	355 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	ZNF302	Q9NR11	478 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	PLAGL2	Q9UPG8	496 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	NOC2L	Q9Y3T9	749 aa	Known RBP	11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	LOXHD1	Q8IVV2	1947 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	KIAA1671	Q9BY89	1806 aa		11.97	□□□□□ -0.49
LSM4-205	ENST00000597776	CCDC196	A0A1B0GTZ2	297 aa		11.96	□□□□□ -0.49
LSM4-205	ENST00000597776	ESYT2	A0FGR8	921 aa		11.96	□□□□□ -0.49
LSM4-205	ENST00000597776	GPR37L1	O60883	481 aa		11.96	□□□□□ -0.49
LSM4-205	ENST00000597776	TBX10	O75333	385 aa		11.96	□□□□□ -0.49
LSM4-205	ENST00000597776	ITGB1	P05556	798 aa		11.96	□□□□□ -0.49
LSM4-205	ENST00000597776	CYP3A4	P08684	503 aa		11.96	□□□□□ -0.49
LSM4-205	ENST00000597776	ZP2	Q05996	745 aa		11.96	□□□□□ -0.49
LSM4-205	ENST00000597776	KIZ	Q2M2Z5	673 aa		11.96	□□□□□ -0.49
LSM4-205	ENST00000597776	MIS18BP1	Q6P0N0	1132 aa		11.96	□□□□□ -0.49
LSM4-205	ENST00000597776	CKAP2L	Q8IYA6	745 aa		11.96	□□□□□ -0.49
LSM4-205	ENST00000597776	REXO1	Q8N1G1	1221 aa	Known RBP	11.96	□□□□□ -0.49
LSM4-205	ENST00000597776	NME8	Q8N427	588 aa		11.96	□□□□□ -0.49
LSM4-205	ENST00000597776	KLHL23	Q8NBE8	558 aa		11.96	□□□□□ -0.49
LSM4-205	ENST00000597776	KCNB2	Q92953	911 aa		11.96	□□□□□ -0.49
LSM4-205	ENST00000597776	ZNF577	Q9BSK1	485 aa		11.96	□□□□□ -0.49
LSM4-205	ENST00000597776	ZMYND12	Q9H0C1	365 aa		11.96	□□□□□ -0.49
LSM4-205	ENST00000597776	ERVK-5	Q9HDB9	667 aa		11.96	□□□□□ -0.49
LSM4-205	ENST00000597776	LRFN2	Q9ULH4	789 aa		11.96	□□□□□ -0.49
LSM4-205	ENST00000597776	HCN4	Q9Y3Q4	1203 aa		11.96	□□□□□ -0.49
LSM4-205	ENST00000597776	SNX14	Q9Y5W7	946 aa		11.96	□□□□□ -0.49
LSM4-205	ENST00000597776	COL1A2	P08123	1366 aa		11.95	□□□□□ -0.5
LSM4-205	ENST00000597776	NID2	Q14112	1375 aa		11.95	□□□□□ -0.5
LSM4-205	ENST00000597776	RPS6KA5	O75582	802 aa		11.95	□□□□□ -0.5
LSM4-205	ENST00000597776	C22orf31	O95567	290 aa		11.95	□□□□□ -0.5
LSM4-205	ENST00000597776	VTN	P04004	478 aa		11.95	□□□□□ -0.5
LSM4-205	ENST00000597776	STAG3L1	P0CL83	205 aa		11.95	□□□□□ -0.5
LSM4-205	ENST00000597776	IRS1	P35568	1242 aa		11.95	□□□□□ -0.5
LSM4-205	ENST00000597776	SARS	P49591	514 aa	Known RBP	11.95	□□□□□ -0.5
LSM4-205	ENST00000597776	PRR16	Q569H4	304 aa		11.95	□□□□□ -0.5
LSM4-205	ENST00000597776	ZNF484	Q5JVG2	852 aa		11.95	□□□□□ -0.5
LSM4-205	ENST00000597776	BLOC1S2	Q6QNY1	142 aa		11.95	□□□□□ -0.5
LSM4-205	ENST00000597776	ADGRD2	Q7Z7M1	963 aa		11.95	□□□□□ -0.5
LSM4-205	ENST00000597776	SPPL3	Q8TCT6	385 aa		11.95	□□□□□ -0.5
LSM4-205	ENST00000597776	P2RX5	Q93086	422 aa		11.95	□□□□□ -0.5
LSM4-205	ENST00000597776	ADAM2	Q99965	735 aa		11.95	□□□□□ -0.5
LSM4-205	ENST00000597776	C6orf50	Q9HD87	102 aa		11.95	□□□□□ -0.5
LSM4-205	ENST00000597776	HCST	Q9UBK5	93 aa		11.95	□□□□□ -0.5
LSM4-205	ENST00000597776	ST3GAL5	Q9UNP4	418 aa		11.95	□□□□□ -0.5
LSM4-205	ENST00000597776	FAM50B	Q9Y247	325 aa		11.95	□□□□□ -0.5
LSM4-205	ENST00000597776	PCDHGC5	Q9Y5F6	944 aa		11.95	□□□□□ -0.5
LSM4-205	ENST00000597776	DENND3	A2RUS2	1198 aa		11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	PRPF3	O43395	683 aa	Known RBP	11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	MBTPS2	O43462	519 aa		11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	NCK2	O43639	380 aa		11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	RPS6KB1	P23443	525 aa		11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	HSPA4	P34932	840 aa		11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	CLCN3	P51790	818 aa		11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	SET	Q01105	290 aa	Predicted RBP	11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	ZNF746	Q6NUN9	644 aa	Predicted RBP	11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	FAM228A	Q86W67	206 aa		11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	ADHFE1	Q8IWW8	467 aa		11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	METTL13	Q8N6R0	699 aa		11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	CCDC12	Q8WUD4	166 aa	Predicted RBP	11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	POF1B	Q8WVV4	589 aa		11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	LENG9	Q96B70	501 aa		11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	OSMR	Q99650	979 aa		11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	SLC26A6	Q9BXS9	759 aa		11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	NCOA5	Q9HCD5	579 aa	Known RBP	11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	TBC1D22B	Q9NU19	505 aa		11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	VPS54	Q9P1Q0	977 aa		11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	GABBR1	Q9UBS5	961 aa		11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	PRKAG3	Q9UGI9	489 aa		11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	TCEAL9	Q9UHQ7	104 aa		11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	PCDHB7	Q9Y5E2	793 aa		11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	MAFB	Q9Y5Q3	323 aa	Predicted RBP	11.94	□□□□□ -0.5
LSM4-205	ENST00000597776	C19orf67	A6NJJ6	358 aa		11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	TBKBP1	A7MCY6	615 aa		11.93	□□□□□ -0.5
LSM4-205	ENST00000597776		C9IYK1	514 aa		11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	EDIL3	O43854	480 aa		11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	GPR32	O75388	356 aa		11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	PSAP	P07602	524 aa		11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	FGFR1	P11362	822 aa		11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	GNA11	P29992	359 aa		11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	NDUFV1	P49821	464 aa		11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	CRYBB1	P53674	252 aa	Predicted RBP	11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	CCT2	P78371	535 aa	Known RBP	11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	AKAP17A	Q02040	695 aa	Known RBP	11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	ADAM15	Q13444	863 aa		11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	SMAD2	Q15796	467 aa	Known RBP	11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	NTRK3	Q16288	839 aa		11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	NAALADL2	Q58DX5	795 aa		11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	SPOUT1	Q5T280	376 aa	Known RBP	11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	FAM102B	Q5T8I3	360 aa		11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	RBM23	Q86U06	439 aa	Known RBP	11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	SMAP1	Q8IYB5	467 aa	Predicted RBP	11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	BBX	Q8WY36	941 aa	Predicted RBP	11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	RGS18	Q9NS28	235 aa		11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	CD207	Q9UJ71	328 aa		11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	SAMM50	Q9Y512	469 aa		11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	PCDHA10	Q9Y5I2	948 aa		11.93	□□□□□ -0.5
LSM4-205	ENST00000597776	TRIO	O75962	3097 aa		11.92	□□□□□ -0.5

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