RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 HBP1O60381 514 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 DGAT1O75907 488 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 FAM13AO94988 1023 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 RFC5P40937 340 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 ZNF165P49910 485 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 ANO5Q75V66 913 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 TLK2Q86UE8 772 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 MCPH1Q8NEM0 835 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 ATP8B4Q8TF62 1192 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 DNAJC19Q96DA6 116 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 DRC1Q96MC2 740 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 BPIFA3Q9BQP9 254 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 DNAJC25Q9H1X3 360 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 CYP26B1Q9NR63 512 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 SEL1LQ9UBV2 794 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 THSD7BQ9C0I4 1608 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 KIAA1217Q5T5P2 1943 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 BECN2A8MW95 431 aa16.91■□□□□ 0.3
TRIM28-209ENST00000597423 STBD1O95210 358 aa16.91■□□□□ 0.3
TRIM28-209ENST00000597423 RARBP10826 455 aa16.91■□□□□ 0.3
TRIM28-209ENST00000597423 CYBAP13498 195 aa16.91■□□□□ 0.3
TRIM28-209ENST00000597423 ERCC5P28715 1186 aaPredicted RBP16.91■□□□□ 0.3
TRIM28-209ENST00000597423 TPM4P67936 248 aa16.91■□□□□ 0.3
TRIM28-209ENST00000597423 CACNB2Q08289 660 aaPredicted RBP16.91■□□□□ 0.3
TRIM28-209ENST00000597423 GJC2Q5T442 439 aaPredicted RBP16.91■□□□□ 0.3
TRIM28-209ENST00000597423 STXBP4Q6ZWJ1 553 aa16.91■□□□□ 0.3
TRIM28-209ENST00000597423 TRMT1LQ7Z2T5 733 aaKnown RBP16.91■□□□□ 0.3
TRIM28-209ENST00000597423 SLC17A8Q8NDX2 589 aa16.91■□□□□ 0.3
TRIM28-209ENST00000597423 FAM200AQ8TCP9 573 aa16.91■□□□□ 0.3
TRIM28-209ENST00000597423 PCYT2Q99447 389 aa16.91■□□□□ 0.3
TRIM28-209ENST00000597423 RUSC1Q9BVN2 902 aa16.91■□□□□ 0.3
TRIM28-209ENST00000597423 PARVGQ9HBI0 331 aa16.91■□□□□ 0.3
TRIM28-209ENST00000597423 TELO2Q9Y4R8 837 aa16.91■□□□□ 0.3
TRIM28-209ENST00000597423 TRIM17Q9Y577 477 aa16.91■□□□□ 0.3
TRIM28-209ENST00000597423 GOLGA6L19H0YKK7 550 aa16.9■□□□□ 0.3
TRIM28-209ENST00000597423 LGALS2P05162 132 aa16.9■□□□□ 0.3
TRIM28-209ENST00000597423 MMP3P08254 477 aa16.9■□□□□ 0.3
TRIM28-209ENST00000597423 HOXD8P13378 290 aaPredicted RBP16.9■□□□□ 0.3
TRIM28-209ENST00000597423 PRKAR2AP13861 404 aaKnown RBP16.9■□□□□ 0.3
TRIM28-209ENST00000597423 UVSSAQ2YD98 709 aa16.9■□□□□ 0.3
TRIM28-209ENST00000597423 DPCR1Q3MIW9 517 aa16.9■□□□□ 0.3
TRIM28-209ENST00000597423 ZNF484Q5JVG2 852 aa16.9■□□□□ 0.3
TRIM28-209ENST00000597423 TMEM63BQ5T3F8 832 aa16.9■□□□□ 0.3
TRIM28-209ENST00000597423 GAS2L3Q86XJ1 694 aa16.9■□□□□ 0.3
TRIM28-209ENST00000597423 MYCT1Q8N699 235 aa16.9■□□□□ 0.3
TRIM28-209ENST00000597423 DNAJC5GQ8N7S2 189 aa16.9■□□□□ 0.3
TRIM28-209ENST00000597423 SLC7A3Q8WY07 619 aa16.9■□□□□ 0.3
TRIM28-209ENST00000597423 KIFAP3Q92845 792 aa16.9■□□□□ 0.3
TRIM28-209ENST00000597423 REEP2Q9BRK0 252 aa16.9■□□□□ 0.3
TRIM28-209ENST00000597423 C17orf75Q9HAS0 396 aa16.9■□□□□ 0.3
TRIM28-209ENST00000597423 LARSQ9P2J5 1176 aaKnown RBP16.9■□□□□ 0.3
TRIM28-209ENST00000597423 TRPC6Q9Y210 931 aa16.9■□□□□ 0.3
TRIM28-209ENST00000597423 NPHP3-ACAD11A0A0J9YXS1 232 aa16.89■□□□□ 0.29
TRIM28-209ENST00000597423 FRMD3A2A2Y4 597 aa16.89■□□□□ 0.29
TRIM28-209ENST00000597423 H3BRB1 525 aa16.89■□□□□ 0.29
TRIM28-209ENST00000597423 PSMA7O14818 248 aa16.89■□□□□ 0.29
TRIM28-209ENST00000597423 GAS2O43903 313 aaKnown RBP16.89■□□□□ 0.29
TRIM28-209ENST00000597423 MSCO60682 206 aa16.89■□□□□ 0.29
TRIM28-209ENST00000597423 USO1O60763 962 aaKnown RBP16.89■□□□□ 0.29
TRIM28-209ENST00000597423 ELNP15502 786 aa16.89■□□□□ 0.29
TRIM28-209ENST00000597423 ATP4AP20648 1035 aa16.89■□□□□ 0.29
TRIM28-209ENST00000597423 GRK4P32298 578 aa16.89■□□□□ 0.29
TRIM28-209ENST00000597423 POLGP54098 1239 aaPredicted RBP16.89■□□□□ 0.29
TRIM28-209ENST00000597423 NPEPPSP55786 919 aa16.89■□□□□ 0.29
TRIM28-209ENST00000597423 RAD51AP2Q09MP3 1159 aa16.89■□□□□ 0.29
TRIM28-209ENST00000597423 COASYQ13057 564 aa16.89■□□□□ 0.29
TRIM28-209ENST00000597423 MTERF2Q49AM1 385 aa16.89■□□□□ 0.29
TRIM28-209ENST00000597423 COBLL1Q53SF7 1204 aa16.89■□□□□ 0.29
TRIM28-209ENST00000597423 FAM26FQ5R3K3 315 aa16.89■□□□□ 0.29
TRIM28-209ENST00000597423 L1TD1Q5T7N2 865 aaKnown RBP16.89■□□□□ 0.29
TRIM28-209ENST00000597423 PLA2G4FQ68DD2 849 aa16.89■□□□□ 0.29
TRIM28-209ENST00000597423 TRPV1Q8NER1 839 aa16.89■□□□□ 0.29
TRIM28-209ENST00000597423 DHTKD1Q96HY7 919 aaPredicted RBP16.89■□□□□ 0.29
TRIM28-209ENST00000597423 TUT1Q9H6E5 874 aaKnown RBP16.89■□□□□ 0.29
TRIM28-209ENST00000597423 ATP6V0A4Q9HBG4 840 aa16.89■□□□□ 0.29
TRIM28-209ENST00000597423 LRRC37A2A6NM11 1700 aa16.88■□□□□ 0.29
TRIM28-209ENST00000597423 SCP2P22307 547 aa16.88■□□□□ 0.29
TRIM28-209ENST00000597423 MARK3P27448 753 aa16.88■□□□□ 0.29
TRIM28-209ENST00000597423 ABCD1P33897 745 aa16.88■□□□□ 0.29
TRIM28-209ENST00000597423 MRE11P49959 708 aa16.88■□□□□ 0.29
TRIM28-209ENST00000597423 SMTNP53814 917 aa16.88■□□□□ 0.29
TRIM28-209ENST00000597423 GJA9P57773 515 aa16.88■□□□□ 0.29
TRIM28-209ENST00000597423 PLCB4Q15147 1175 aa16.88■□□□□ 0.29
TRIM28-209ENST00000597423 FSCN1Q16658 493 aaKnown RBP16.88■□□□□ 0.29
TRIM28-209ENST00000597423 FAM102BQ5T8I3 360 aa16.88■□□□□ 0.29
TRIM28-209ENST00000597423 TCP11Q8WWU5 503 aa16.88■□□□□ 0.29
TRIM28-209ENST00000597423 IFT74Q96LB3 600 aa16.88■□□□□ 0.29
TRIM28-209ENST00000597423 KATNAL1Q9BW62 490 aa16.88■□□□□ 0.29
TRIM28-209ENST00000597423 RBSNQ9H1K0 784 aa16.88■□□□□ 0.29
TRIM28-209ENST00000597423 TSKSQ9UJT2 592 aa16.88■□□□□ 0.29
TRIM28-209ENST00000597423 MGAMO43451 1857 aa16.88■□□□□ 0.29
TRIM28-209ENST00000597423 FSD2A1L4K1 749 aa16.87■□□□□ 0.29
TRIM28-209ENST00000597423 MAGEB2O15479 319 aa16.87■□□□□ 0.29
TRIM28-209ENST00000597423 HIP1RO75146 1068 aa16.87■□□□□ 0.29
TRIM28-209ENST00000597423 MAPTP10636 758 aaKnown RBP16.87■□□□□ 0.29
TRIM28-209ENST00000597423 BMP6P22004 513 aa16.87■□□□□ 0.29
TRIM28-209ENST00000597423 DNM2P50570 870 aa16.87■□□□□ 0.29
TRIM28-209ENST00000597423 ZNF131P52739 623 aa16.87■□□□□ 0.29
TRIM28-209ENST00000597423 RTP1P59025 263 aa16.87■□□□□ 0.29
TRIM28-209ENST00000597423 NKX3-2P78367 333 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms