RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 TNFRSF25Q93038 417 aa17.06■□□□□ 0.32
TRIM28-205ENST00000595028 UNC45AQ9H3U1 944 aa17.06■□□□□ 0.32
TRIM28-205ENST00000595028 DISC1Q9NRI5 854 aa17.06■□□□□ 0.32
TRIM28-205ENST00000595028 GABBR1Q9UBS5 961 aa17.06■□□□□ 0.32
TRIM28-205ENST00000595028 PCDHA2Q9Y5H9 948 aa17.06■□□□□ 0.32
TRIM28-205ENST00000595028 SMIM35A0A1B0GVV1 85 aa17.05■□□□□ 0.32
TRIM28-205ENST00000595028 FAM205CA6NFA0 338 aa17.05■□□□□ 0.32
TRIM28-205ENST00000595028 ZBTB42B2RXF5 422 aa17.05■□□□□ 0.32
TRIM28-205ENST00000595028 MMP1P03956 469 aa17.05■□□□□ 0.32
TRIM28-205ENST00000595028 CA3P07451 260 aa17.05■□□□□ 0.32
TRIM28-205ENST00000595028 NR5A1Q13285 461 aa17.05■□□□□ 0.32
TRIM28-205ENST00000595028 RABEP1Q15276 862 aa17.05■□□□□ 0.32
TRIM28-205ENST00000595028 EARS2Q5JPH6 523 aaKnown RBP17.05■□□□□ 0.32
TRIM28-205ENST00000595028 ZNF484Q5JVG2 852 aa17.05■□□□□ 0.32
TRIM28-205ENST00000595028 MTHFD1LQ6UB35 978 aa17.05■□□□□ 0.32
TRIM28-205ENST00000595028 CKAP2LQ8IYA6 745 aa17.05■□□□□ 0.32
TRIM28-205ENST00000595028 RDM1Q8NG50 284 aa17.05■□□□□ 0.32
TRIM28-205ENST00000595028 BBXQ8WY36 941 aaPredicted RBP17.05■□□□□ 0.32
TRIM28-205ENST00000595028 APBB2Q92870 758 aa17.05■□□□□ 0.32
TRIM28-205ENST00000595028 FAM167AQ96KS9 214 aa17.05■□□□□ 0.32
TRIM28-205ENST00000595028 CDY2AQ9Y6F7 541 aa17.05■□□□□ 0.32
TRIM28-205ENST00000595028 KIF28PB7ZC32 967 aa17.04■□□□□ 0.32
TRIM28-205ENST00000595028 GJB5O95377 273 aa17.04■□□□□ 0.32
TRIM28-205ENST00000595028 GHRP10912 638 aa17.04■□□□□ 0.32
TRIM28-205ENST00000595028 FOSBP53539 338 aa17.04■□□□□ 0.32
TRIM28-205ENST00000595028 TRIM29Q14134 588 aa17.04■□□□□ 0.32
TRIM28-205ENST00000595028 LPIN1Q14693 890 aa17.04■□□□□ 0.32
TRIM28-205ENST00000595028 KRT40Q6A162 431 aa17.04■□□□□ 0.32
TRIM28-205ENST00000595028 PPP4R3AQ6IN85 833 aa17.04■□□□□ 0.32
TRIM28-205ENST00000595028 B3GNT9Q6UX72 402 aa17.04■□□□□ 0.32
TRIM28-205ENST00000595028 TMCO2Q7Z6W1 182 aaPredicted RBP17.04■□□□□ 0.32
TRIM28-205ENST00000595028 ZSCAN31Q96LW9 406 aaPredicted RBP17.04■□□□□ 0.32
TRIM28-205ENST00000595028 NAP1L4Q99733 375 aaKnown RBP17.04■□□□□ 0.32
TRIM28-205ENST00000595028 LLPHQ9BRT6 129 aaKnown RBP17.04■□□□□ 0.32
TRIM28-205ENST00000595028 IFIH1Q9BYX4 1025 aaKnown RBP17.04■□□□□ 0.32
TRIM28-205ENST00000595028 UPF2Q9HAU5 1272 aaKnown RBP17.04■□□□□ 0.32
TRIM28-205ENST00000595028 KCNMB3Q9NPA1 279 aa17.04■□□□□ 0.32
TRIM28-205ENST00000595028 SH2B1Q9NRF2 756 aaPredicted RBP17.04■□□□□ 0.32
TRIM28-205ENST00000595028 TRPV2Q9Y5S1 764 aa17.04■□□□□ 0.32
TRIM28-205ENST00000595028 COL4A4P53420 1690 aaPredicted RBP17.04■□□□□ 0.32
TRIM28-205ENST00000595028 PRRC2BQ5JSZ5 2229 aaKnown RBP17.03■□□□□ 0.32
TRIM28-205ENST00000595028 TLL1O43897 1013 aa17.03■□□□□ 0.32
TRIM28-205ENST00000595028 ZNF862O60290 1169 aa17.03■□□□□ 0.32
TRIM28-205ENST00000595028 CCNT1O60563 726 aaKnown RBP17.03■□□□□ 0.32
TRIM28-205ENST00000595028 C22orf31O95567 290 aa17.03■□□□□ 0.32
TRIM28-205ENST00000595028 AMHP03971 560 aa17.03■□□□□ 0.32
TRIM28-205ENST00000595028 PRKCEQ02156 737 aa17.03■□□□□ 0.32
TRIM28-205ENST00000595028 SKIV2LQ15477 1246 aaKnown RBP17.03■□□□□ 0.32
TRIM28-205ENST00000595028 UGCGQ16739 394 aa17.03■□□□□ 0.32
TRIM28-205ENST00000595028 FBXO47Q5MNV8 452 aa17.03■□□□□ 0.32
TRIM28-205ENST00000595028 IER5Q5VY09 327 aa17.03■□□□□ 0.32
TRIM28-205ENST00000595028 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.03■□□□□ 0.32
TRIM28-205ENST00000595028 MIER3Q7Z3K6 550 aa17.03■□□□□ 0.32
TRIM28-205ENST00000595028 DIS3L2Q8IYB7 885 aaKnown RBP17.03■□□□□ 0.32
TRIM28-205ENST00000595028 C11orf16Q9NQ32 467 aa17.03■□□□□ 0.32
TRIM28-205ENST00000595028 CEP131Q9UPN4 1083 aa17.03■□□□□ 0.32
TRIM28-205ENST00000595028 KDM3AQ9Y4C1 1321 aa17.02■□□□□ 0.32
TRIM28-205ENST00000595028 COL4A6Q14031 1691 aa17.02■□□□□ 0.32
TRIM28-205ENST00000595028 M0QZ92 97 aa17.02■□□□□ 0.32
TRIM28-205ENST00000595028 GPR37L1O60883 481 aa17.02■□□□□ 0.32
TRIM28-205ENST00000595028 ARHGEF15O94989 841 aa17.02■□□□□ 0.32
TRIM28-205ENST00000595028 OATP04181 439 aa17.02■□□□□ 0.32
TRIM28-205ENST00000595028 KLRC1P26715 233 aa17.02■□□□□ 0.32
TRIM28-205ENST00000595028 TMEM62Q0P6H9 643 aa17.02■□□□□ 0.32
TRIM28-205ENST00000595028 TSHZ1Q6ZSZ6 1077 aa17.02■□□□□ 0.32
TRIM28-205ENST00000595028 POTEDQ86YR6 584 aa17.02■□□□□ 0.32
TRIM28-205ENST00000595028 MYOCDQ8IZQ8 938 aa17.02■□□□□ 0.32
TRIM28-205ENST00000595028 FAM20AQ96MK3 541 aa17.02■□□□□ 0.32
TRIM28-205ENST00000595028 VAV3Q9UKW4 847 aa17.02■□□□□ 0.32
TRIM28-205ENST00000595028 LCHNA4D1U4 455 aa17.01■□□□□ 0.31
TRIM28-205ENST00000595028 FAM86C2PA6NEL3 165 aa17.01■□□□□ 0.31
TRIM28-205ENST00000595028 BTBD18B2RXH4 712 aa17.01■□□□□ 0.31
TRIM28-205ENST00000595028 TBX3O15119 743 aa17.01■□□□□ 0.31
TRIM28-205ENST00000595028 HMGN5P82970 282 aaKnown RBP17.01■□□□□ 0.31
TRIM28-205ENST00000595028 TAP1Q03518 808 aa17.01■□□□□ 0.31
TRIM28-205ENST00000595028 PPP2R5CQ13362 524 aa17.01■□□□□ 0.31
TRIM28-205ENST00000595028 TRMT1LQ7Z2T5 733 aaKnown RBP17.01■□□□□ 0.31
TRIM28-205ENST00000595028 NME8Q8N427 588 aa17.01■□□□□ 0.31
TRIM28-205ENST00000595028 KHSRPQ92945 711 aaKnown RBP eCLIP17.01■□□□□ 0.31
TRIM28-205ENST00000595028 ZBED2Q9BTP6 218 aa17.01■□□□□ 0.31
TRIM28-205ENST00000595028 SQORQ9Y6N5 450 aa17.01■□□□□ 0.31
TRIM28-205ENST00000595028 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17■□□□□ 0.31
TRIM28-205ENST00000595028 ST18O60284 1047 aa17■□□□□ 0.31
TRIM28-205ENST00000595028 TTC3P53804 2025 aa17■□□□□ 0.31
TRIM28-205ENST00000595028 FAM117BQ6P1L5 589 aa17■□□□□ 0.31
TRIM28-205ENST00000595028 KIAA0319LQ8IZA0 1049 aa17■□□□□ 0.31
TRIM28-205ENST00000595028 HAS1Q92839 578 aa17■□□□□ 0.31
TRIM28-205ENST00000595028 C8orf76Q96K31 380 aa17■□□□□ 0.31
TRIM28-205ENST00000595028 RAD9AQ99638 391 aa17■□□□□ 0.31
TRIM28-205ENST00000595028 CELF4Q9BZC1 486 aaKnown RBP17■□□□□ 0.31
TRIM28-205ENST00000595028 AGO3Q9H9G7 860 aaKnown RBP17■□□□□ 0.31
TRIM28-205ENST00000595028 WDFY4Q6ZS81 3184 aa16.99■□□□□ 0.31
TRIM28-205ENST00000595028 ARID2Q68CP9 1835 aa16.99■□□□□ 0.31
TRIM28-205ENST00000595028 MAGEB2O15479 319 aa16.99■□□□□ 0.31
TRIM28-205ENST00000595028 CD52P31358 61 aa16.99■□□□□ 0.31
TRIM28-205ENST00000595028 GUCY1B3Q02153 619 aa16.99■□□□□ 0.31
TRIM28-205ENST00000595028 SAFBQ15424 915 aaKnown RBP eCLIP16.99■□□□□ 0.31
TRIM28-205ENST00000595028 TBC1D32Q96NH3 1257 aa16.99■□□□□ 0.31
TRIM28-205ENST00000595028 NRBP2Q9NSY0 501 aa16.99■□□□□ 0.31
TRIM28-205ENST00000595028 SEPT9Q9UHD8 586 aaPredicted RBP16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms