RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 KCNB2Q92953 911 aa13.38□□□□□ -0.27
CLIP3-204ENST00000590559 GLT8D2Q9H1C3 349 aa13.38□□□□□ -0.27
CLIP3-204ENST00000590559 CDHR5Q9HBB8 845 aa13.38□□□□□ -0.27
CLIP3-204ENST00000590559 ERVK-5Q9HDB9 667 aa13.38□□□□□ -0.27
CLIP3-204ENST00000590559 PIEZO1Q92508 2521 aa13.38□□□□□ -0.27
CLIP3-204ENST00000590559 ESYT2A0FGR8 921 aa13.37□□□□□ -0.27
CLIP3-204ENST00000590559 M0QZ92 97 aa13.37□□□□□ -0.27
CLIP3-204ENST00000590559 STAG3L1P0CL83 205 aa13.37□□□□□ -0.27
CLIP3-204ENST00000590559 SARSP49591 514 aaKnown RBP13.37□□□□□ -0.27
CLIP3-204ENST00000590559 GATMP50440 423 aa13.37□□□□□ -0.27
CLIP3-204ENST00000590559 KRT76Q01546 638 aa13.37□□□□□ -0.27
CLIP3-204ENST00000590559 SMAD4Q13485 552 aaKnown RBP13.37□□□□□ -0.27
CLIP3-204ENST00000590559 PKN1Q16512 942 aa13.37□□□□□ -0.27
CLIP3-204ENST00000590559 PFKFB3Q16875 520 aaPredicted RBP13.37□□□□□ -0.27
CLIP3-204ENST00000590559 TMEM266Q2M3C6 531 aa13.37□□□□□ -0.27
CLIP3-204ENST00000590559 KLHL23Q8NBE8 558 aa13.37□□□□□ -0.27
CLIP3-204ENST00000590559 ZMYND12Q9H0C1 365 aa13.37□□□□□ -0.27
CLIP3-204ENST00000590559 RGS18Q9NS28 235 aa13.37□□□□□ -0.27
CLIP3-204ENST00000590559 CLEC1BQ9P126 229 aa13.37□□□□□ -0.27
CLIP3-204ENST00000590559 NOC2LQ9Y3T9 749 aaKnown RBP13.37□□□□□ -0.27
CLIP3-204ENST00000590559 MAFBQ9Y5Q3 323 aaPredicted RBP13.37□□□□□ -0.27
CLIP3-204ENST00000590559 TECTAO75443 2155 aa13.37□□□□□ -0.27
CLIP3-204ENST00000590559 MYO15AQ9UKN7 3530 aa13.36□□□□□ -0.27
CLIP3-204ENST00000590559 DMDP11532 3685 aa13.36□□□□□ -0.27
CLIP3-204ENST00000590559 KLF18A0A0U1RQI7 1052 aa13.36□□□□□ -0.27
CLIP3-204ENST00000590559 GOLGA8AA7E2F4 631 aa13.36□□□□□ -0.27
CLIP3-204ENST00000590559 GOLGA8BA8MQT2 603 aa13.36□□□□□ -0.27
CLIP3-204ENST00000590559 C9IYK1 514 aa13.36□□□□□ -0.27
CLIP3-204ENST00000590559 EDIL3O43854 480 aa13.36□□□□□ -0.27
CLIP3-204ENST00000590559 ADD1P35611 737 aaKnown RBP13.36□□□□□ -0.27
CLIP3-204ENST00000590559 FAM189BP81408 668 aa13.36□□□□□ -0.27
CLIP3-204ENST00000590559 ZNF484Q5JVG2 852 aa13.36□□□□□ -0.27
CLIP3-204ENST00000590559 FBXL16Q8N461 479 aa13.36□□□□□ -0.27
CLIP3-204ENST00000590559 EFHBQ8N7U6 833 aa13.36□□□□□ -0.27
CLIP3-204ENST00000590559 IPO5O00410 1097 aaKnown RBP13.35□□□□□ -0.27
CLIP3-204ENST00000590559 GPR32O75388 356 aa13.35□□□□□ -0.27
CLIP3-204ENST00000590559 C22orf31O95567 290 aa13.35□□□□□ -0.27
CLIP3-204ENST00000590559 GLP2RO95838 553 aa13.35□□□□□ -0.27
CLIP3-204ENST00000590559 COASYQ13057 564 aa13.35□□□□□ -0.27
CLIP3-204ENST00000590559 DSC3Q14574 896 aa13.35□□□□□ -0.27
CLIP3-204ENST00000590559 PAN2Q504Q3 1202 aaKnown RBP13.35□□□□□ -0.27
CLIP3-204ENST00000590559 HERC4Q5GLZ8 1057 aaPredicted RBP13.35□□□□□ -0.27
CLIP3-204ENST00000590559 JAKMIP3Q5VZ66 844 aa13.35□□□□□ -0.27
CLIP3-204ENST00000590559 FAM160B1Q5W0V3 765 aa13.35□□□□□ -0.27
CLIP3-204ENST00000590559 SWSAP1Q6NVH7 229 aa13.35□□□□□ -0.27
CLIP3-204ENST00000590559 EP400NLQ6ZTU2 488 aa13.35□□□□□ -0.27
CLIP3-204ENST00000590559 PLA2G4DQ86XP0 818 aa13.35□□□□□ -0.27
CLIP3-204ENST00000590559 LINC01465Q8N7H1 131 aa13.35□□□□□ -0.27
CLIP3-204ENST00000590559 SMRP1Q8NCR6 262 aa13.35□□□□□ -0.27
CLIP3-204ENST00000590559 POF1BQ8WVV4 589 aa13.35□□□□□ -0.27
CLIP3-204ENST00000590559 LENG9Q96B70 501 aa13.35□□□□□ -0.27
CLIP3-204ENST00000590559 AGXT2Q9BYV1 514 aa13.35□□□□□ -0.27
CLIP3-204ENST00000590559 ZNF302Q9NR11 478 aa13.35□□□□□ -0.27
CLIP3-204ENST00000590559 CD207Q9UJ71 328 aa13.35□□□□□ -0.27
CLIP3-204ENST00000590559 ST3GAL5Q9UNP4 418 aa13.35□□□□□ -0.27
CLIP3-204ENST00000590559 DDX39AO00148 427 aaKnown RBP13.34□□□□□ -0.27
CLIP3-204ENST00000590559 RPS6KA5O75582 802 aa13.34□□□□□ -0.27
CLIP3-204ENST00000590559 HMGB1P09429 215 aaKnown RBP13.34□□□□□ -0.27
CLIP3-204ENST00000590559 CIITAP33076 1130 aa13.34□□□□□ -0.27
CLIP3-204ENST00000590559 CRYBB1P53674 252 aaPredicted RBP13.34□□□□□ -0.27
CLIP3-204ENST00000590559 NFX1Q12986 1120 aaKnown RBP13.34□□□□□ -0.27
CLIP3-204ENST00000590559 KRT32Q14532 448 aa13.34□□□□□ -0.27
CLIP3-204ENST00000590559 CLUL1Q15846 466 aa13.34□□□□□ -0.27
CLIP3-204ENST00000590559 NTRK3Q16288 839 aa13.34□□□□□ -0.27
CLIP3-204ENST00000590559 FAM102BQ5T8I3 360 aa13.34□□□□□ -0.27
CLIP3-204ENST00000590559 MCTP2Q6DN12 878 aa13.34□□□□□ -0.27
CLIP3-204ENST00000590559 ZNF746Q6NUN9 644 aaPredicted RBP13.34□□□□□ -0.27
CLIP3-204ENST00000590559 MIS18BP1Q6P0N0 1132 aa13.34□□□□□ -0.27
CLIP3-204ENST00000590559 PDXDC2PQ6P474 469 aa13.34□□□□□ -0.27
CLIP3-204ENST00000590559 SLC24A5Q71RS6 500 aa13.34□□□□□ -0.27
CLIP3-204ENST00000590559 FAM228AQ86W67 206 aa13.34□□□□□ -0.27
CLIP3-204ENST00000590559 BBXQ8WY36 941 aaPredicted RBP13.34□□□□□ -0.27
CLIP3-204ENST00000590559 ADAM2Q99965 735 aa13.34□□□□□ -0.27
CLIP3-204ENST00000590559 IGFLR1Q9H665 355 aa13.34□□□□□ -0.27
CLIP3-204ENST00000590559 CWH43Q9H720 699 aa13.34□□□□□ -0.27
CLIP3-204ENST00000590559 C1orf112Q9NSG2 853 aa13.34□□□□□ -0.27
CLIP3-204ENST00000590559 TBC1D22BQ9NU19 505 aa13.34□□□□□ -0.27
CLIP3-204ENST00000590559 BACH1O14867 736 aa13.33□□□□□ -0.28
CLIP3-204ENST00000590559 PRPF3O43395 683 aaKnown RBP13.33□□□□□ -0.28
CLIP3-204ENST00000590559 CPA1P15085 419 aa13.33□□□□□ -0.28
CLIP3-204ENST00000590559 ZNF76P36508 570 aa13.33□□□□□ -0.28
CLIP3-204ENST00000590559 SETQ01105 290 aaPredicted RBP13.33□□□□□ -0.28
CLIP3-204ENST00000590559 UBE3AQ05086 875 aa13.33□□□□□ -0.28
CLIP3-204ENST00000590559 KCNC3Q14003 757 aa13.33□□□□□ -0.28
CLIP3-204ENST00000590559 CBX2Q14781 532 aaPredicted RBP13.33□□□□□ -0.28
CLIP3-204ENST00000590559 RNF135Q8IUD6 432 aa13.33□□□□□ -0.28
CLIP3-204ENST00000590559 SMAP1Q8IYB5 467 aaPredicted RBP13.33□□□□□ -0.28
CLIP3-204ENST00000590559 POP1Q99575 1024 aaKnown RBP13.33□□□□□ -0.28
CLIP3-204ENST00000590559 ZNF577Q9BSK1 485 aa13.33□□□□□ -0.28
CLIP3-204ENST00000590559 UPF3BQ9BZI7 483 aaKnown RBP13.33□□□□□ -0.28
CLIP3-204ENST00000590559 KCNH6Q9H252 994 aa13.33□□□□□ -0.28
CLIP3-204ENST00000590559 ELAC1Q9H777 363 aaKnown RBP13.33□□□□□ -0.28
CLIP3-204ENST00000590559 RNF19AQ9NV58 838 aa13.33□□□□□ -0.28
CLIP3-204ENST00000590559 PCDHB7Q9Y5E2 793 aa13.33□□□□□ -0.28
CLIP3-204ENST00000590559 PCDHGC5Q9Y5F6 944 aa13.33□□□□□ -0.28
CLIP3-204ENST00000590559 KMT2EQ8IZD2 1858 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 LOC730098B7Z3J9 87 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 FSCN2O14926 492 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 GPR182O15218 404 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 CDC45O75419 566 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms