RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 HMGB1P09429 215 aaKnown RBP13.5□□□□□ -0.25
LIG3-209ENST00000586435 FAM86B2P0C5J1 330 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 DNAJB1P25685 340 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 KLRC1P26715 233 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 CDC27P30260 824 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 GTF2F1P35269 517 aaKnown RBP eCLIP13.5□□□□□ -0.25
LIG3-209ENST00000586435 IRS1P35568 1242 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 ZNF76P36508 570 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 SETQ01105 290 aaPredicted RBP13.5□□□□□ -0.25
LIG3-209ENST00000586435 UBE3AQ05086 875 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 PFKFB3Q16875 520 aaPredicted RBP13.5□□□□□ -0.25
LIG3-209ENST00000586435 CSPP1Q1MSJ5 1256 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 ADCK5Q3MIX3 580 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 PAN2Q504Q3 1202 aaKnown RBP13.5□□□□□ -0.25
LIG3-209ENST00000586435 ZNF484Q5JVG2 852 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 PLA2G4DQ86XP0 818 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 KIAA0319LQ8IZA0 1049 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 EFHBQ8N7U6 833 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 KLHL23Q8NBE8 558 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 POF1BQ8WVV4 589 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 MSLNLQ96KJ4 702 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 TCEANC2Q96MN5 208 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 KCNH6Q9H252 994 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 ZNF302Q9NR11 478 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 TMEM260Q9NX78 707 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 LRFN2Q9ULH4 789 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 KLF18A0A0U1RQI7 1052 aa13.49□□□□□ -0.25
LIG3-209ENST00000586435 CCDC196A0A1B0GTZ2 297 aa13.49□□□□□ -0.25
LIG3-209ENST00000586435 FSD2A1L4K1 749 aa13.49□□□□□ -0.25
LIG3-209ENST00000586435 ZBTB42B2RXF5 422 aa13.49□□□□□ -0.25
LIG3-209ENST00000586435 DDX39AO00148 427 aaKnown RBP13.49□□□□□ -0.25
LIG3-209ENST00000586435 IPO5O00410 1097 aaKnown RBP13.49□□□□□ -0.25
LIG3-209ENST00000586435 LINC01565O15544 149 aa13.49□□□□□ -0.25
LIG3-209ENST00000586435 RPS6KA5O75582 802 aa13.49□□□□□ -0.25
LIG3-209ENST00000586435 NDUFV1P49821 464 aa13.49□□□□□ -0.25
LIG3-209ENST00000586435 NFX1Q12986 1120 aaKnown RBP13.49□□□□□ -0.25
LIG3-209ENST00000586435 COASYQ13057 564 aa13.49□□□□□ -0.25
LIG3-209ENST00000586435 TMEM266Q2M3C6 531 aa13.49□□□□□ -0.25
LIG3-209ENST00000586435 HERC4Q5GLZ8 1057 aaPredicted RBP13.49□□□□□ -0.25
LIG3-209ENST00000586435 ZNF746Q6NUN9 644 aaPredicted RBP13.49□□□□□ -0.25
LIG3-209ENST00000586435 MIS18BP1Q6P0N0 1132 aa13.49□□□□□ -0.25
LIG3-209ENST00000586435 PDXDC2PQ6P474 469 aa13.49□□□□□ -0.25
LIG3-209ENST00000586435 ADGRD2Q7Z7M1 963 aa13.49□□□□□ -0.25
LIG3-209ENST00000586435 SMAP1Q8IYB5 467 aaPredicted RBP13.49□□□□□ -0.25
LIG3-209ENST00000586435 RASEFQ8IZ41 740 aa13.49□□□□□ -0.25
LIG3-209ENST00000586435 SMRP1Q8NCR6 262 aa13.49□□□□□ -0.25
LIG3-209ENST00000586435 TMEM40Q8WWA1 233 aa13.49□□□□□ -0.25
LIG3-209ENST00000586435 BBXQ8WY36 941 aaPredicted RBP13.49□□□□□ -0.25
LIG3-209ENST00000586435 ZMYND12Q9H0C1 365 aa13.49□□□□□ -0.25
LIG3-209ENST00000586435 RGS18Q9NS28 235 aa13.49□□□□□ -0.25
LIG3-209ENST00000586435 TBC1D22BQ9NU19 505 aa13.49□□□□□ -0.25
LIG3-209ENST00000586435 NOC2LQ9Y3T9 749 aaKnown RBP13.49□□□□□ -0.25
LIG3-209ENST00000586435 PCDHB7Q9Y5E2 793 aa13.49□□□□□ -0.25
LIG3-209ENST00000586435 C5orf42Q9H799 3197 aa13.48□□□□□ -0.25
LIG3-209ENST00000586435 C9IYK1 514 aa13.48□□□□□ -0.25
LIG3-209ENST00000586435 GPR182O15218 404 aa13.48□□□□□ -0.25
LIG3-209ENST00000586435 MGEA5O60502 916 aa13.48□□□□□ -0.25
LIG3-209ENST00000586435 C22orf31O95567 290 aa13.48□□□□□ -0.25
LIG3-209ENST00000586435 ATP4AP20648 1035 aa13.48□□□□□ -0.25
LIG3-209ENST00000586435 GATMP50440 423 aa13.48□□□□□ -0.25
LIG3-209ENST00000586435 CLUL1Q15846 466 aa13.48□□□□□ -0.25
LIG3-209ENST00000586435 JAKMIP3Q5VZ66 844 aa13.48□□□□□ -0.25
LIG3-209ENST00000586435 SLC24A5Q71RS6 500 aa13.48□□□□□ -0.25
LIG3-209ENST00000586435 CCDC12Q8WUD4 166 aaPredicted RBP13.48□□□□□ -0.25
LIG3-209ENST00000586435 IGFLR1Q9H665 355 aa13.48□□□□□ -0.25
LIG3-209ENST00000586435 ELAC1Q9H777 363 aaKnown RBP13.48□□□□□ -0.25
LIG3-209ENST00000586435 AAASQ9NRG9 546 aa13.48□□□□□ -0.25
LIG3-209ENST00000586435 CLEC1BQ9P126 229 aa13.48□□□□□ -0.25
LIG3-209ENST00000586435 ST3GAL5Q9UNP4 418 aa13.48□□□□□ -0.25
LIG3-209ENST00000586435 PCDHB12Q9Y5F1 795 aa13.48□□□□□ -0.25
LIG3-209ENST00000586435 MAFBQ9Y5Q3 323 aaPredicted RBP13.48□□□□□ -0.25
LIG3-209ENST00000586435 DENND3A2RUS2 1198 aa13.47□□□□□ -0.25
LIG3-209ENST00000586435 CDC45O75419 566 aa13.47□□□□□ -0.25
LIG3-209ENST00000586435 CSPG5O95196 566 aa13.47□□□□□ -0.25
LIG3-209ENST00000586435 CIITAP33076 1130 aa13.47□□□□□ -0.25
LIG3-209ENST00000586435 METAP2P50579 478 aaKnown RBP eCLIP13.47□□□□□ -0.25
LIG3-209ENST00000586435 CRYBB1P53674 252 aaPredicted RBP13.47□□□□□ -0.25
LIG3-209ENST00000586435 SWSAP1Q6NVH7 229 aa13.47□□□□□ -0.25
LIG3-209ENST00000586435 REXO1Q8N1G1 1221 aaKnown RBP13.47□□□□□ -0.25
LIG3-209ENST00000586435 ZNF710Q8N1W2 664 aa13.47□□□□□ -0.25
LIG3-209ENST00000586435 FBXL16Q8N461 479 aa13.47□□□□□ -0.25
LIG3-209ENST00000586435 KCNB2Q92953 911 aa13.47□□□□□ -0.25
LIG3-209ENST00000586435 ADAM2Q99965 735 aa13.47□□□□□ -0.25
LIG3-209ENST00000586435 ZNF577Q9BSK1 485 aa13.47□□□□□ -0.25
LIG3-209ENST00000586435 CDHR5Q9HBB8 845 aa13.47□□□□□ -0.25
LIG3-209ENST00000586435 C6orf50Q9HD87 102 aa13.47□□□□□ -0.25
LIG3-209ENST00000586435 TMEM161AQ9NX61 479 aa13.47□□□□□ -0.25
LIG3-209ENST00000586435 CEP131Q9UPN4 1083 aa13.47□□□□□ -0.25
LIG3-209ENST00000586435 GINS2Q9Y248 185 aa13.47□□□□□ -0.25
LIG3-209ENST00000586435 GPR32O75388 356 aa13.46□□□□□ -0.25
LIG3-209ENST00000586435 GLP2RO95838 553 aa13.46□□□□□ -0.25
LIG3-209ENST00000586435 PSAPP07602 524 aa13.46□□□□□ -0.25
LIG3-209ENST00000586435 GNA11P29992 359 aa13.46□□□□□ -0.25
LIG3-209ENST00000586435 ADD1P35611 737 aaKnown RBP13.46□□□□□ -0.25
LIG3-209ENST00000586435 NRIP1P48552 1158 aa13.46□□□□□ -0.25
LIG3-209ENST00000586435 FAM189BP81408 668 aa13.46□□□□□ -0.25
LIG3-209ENST00000586435 PKN1Q16512 942 aa13.46□□□□□ -0.25
LIG3-209ENST00000586435 PDE12Q6L8Q7 609 aaKnown RBP13.46□□□□□ -0.25
LIG3-209ENST00000586435 CENPQQ7L2Z9 268 aaPredicted RBP13.46□□□□□ -0.25
LIG3-209ENST00000586435 FAM228AQ86W67 206 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms