RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 ADGRA2Q96PE1 1338 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 SFI1A8K8P3 1242 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 ESPNB1AK53 854 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 TEX33O43247 280 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 ZNF862O60290 1169 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 DKC1O60832 514 aaKnown RBP eCLIP11.64□□□□□ -0.55
SS18-217ENST00000580958 HIP1RO75146 1068 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 STBD1O95210 358 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 MYBP10242 640 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 GUCY2CP25092 1073 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 ADORA2AP29274 412 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 RARRES1P49788 294 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 CASP5P51878 434 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 LRRC63Q05C16 580 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 NR1I3Q14994 352 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 FAM110CQ1W6H9 321 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 ZNF792Q3KQV3 632 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 FILIP1LQ4L180 1135 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 XKR9Q5GH70 373 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 PLA2G4FQ68DD2 849 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 SWSAP1Q6NVH7 229 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 EPM2AIP1Q7L775 607 aaPredicted RBP11.64□□□□□ -0.55
SS18-217ENST00000580958 TRMT1LQ7Z2T5 733 aaKnown RBP11.64□□□□□ -0.55
SS18-217ENST00000580958 CREBRFQ8IUR6 639 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 CCDC60Q8IWA6 550 aaPredicted RBP11.64□□□□□ -0.55
SS18-217ENST00000580958 FBXO16Q8IX29 292 aaPredicted RBP11.64□□□□□ -0.55
SS18-217ENST00000580958 NELFCDQ8IXH7 590 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 MYCT1Q8N699 235 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 PDCD7Q8N8D1 485 aaKnown RBP11.64□□□□□ -0.55
SS18-217ENST00000580958 ANKRD20A12PQ8NF67 263 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 MORC4Q8TE76 937 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 CTAGE1Q96RT6 745 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 PARVGQ9HBI0 331 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 GPBP1L1Q9HC44 474 aaPredicted RBP11.64□□□□□ -0.55
SS18-217ENST00000580958 ANKEF1Q9NU02 776 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 KCND2Q9NZV8 630 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 IMPACTQ9P2X3 320 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 MAGEC2Q9UBF1 373 aaPredicted RBP11.64□□□□□ -0.55
SS18-217ENST00000580958 CPA4Q9UI42 421 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 ODF2LQ9ULJ1 636 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 ZKSCAN5Q9Y2L8 839 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 KAT6AQ92794 2004 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 EVPLQ92817 2033 aa11.64□□□□□ -0.55
SS18-217ENST00000580958 SYNGAP1Q96PV0 1343 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 IGSF9BQ9UPX0 1349 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 LOC102724159A0A0B4J2E5 919 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 ASB14A6NK59 587 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 KIF3CO14782 793 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 USO1O60763 962 aaKnown RBP11.63□□□□□ -0.55
SS18-217ENST00000580958 FARP2O94887 1054 aaPredicted RBP11.63□□□□□ -0.55
SS18-217ENST00000580958 PRPF6O94906 941 aaKnown RBP11.63□□□□□ -0.55
SS18-217ENST00000580958 KIF20AO95235 890 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 ARIH2O95376 493 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 GGPS1O95749 300 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 EEF1GP26641 437 aaKnown RBP11.63□□□□□ -0.55
SS18-217ENST00000580958 NMT1P30419 496 aaKnown RBP11.63□□□□□ -0.55
SS18-217ENST00000580958 ZNF131P52739 623 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 NPEPPSP55786 919 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 MAPK7Q13164 816 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 NEDD9Q14511 834 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 ARID5BQ14865 1188 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 PWP2Q15269 919 aaKnown RBP11.63□□□□□ -0.55
SS18-217ENST00000580958 TAF1CQ15572 869 aaPredicted RBP11.63□□□□□ -0.55
SS18-217ENST00000580958 LY6KQ17RY6 165 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 ZCWPW2Q504Y3 356 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 UTP14CQ5TAP6 766 aaKnown RBP11.63□□□□□ -0.55
SS18-217ENST00000580958 ARMCX2Q7L311 632 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 MAEAQ7L5Y9 396 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 GPR142Q7Z601 462 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 PLEKHH3Q7Z736 793 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 FAM114A1Q8IWE2 563 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 DAW1Q8N136 415 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 ATP6V0A1Q93050 837 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 CNOT6LQ96LI5 555 aaKnown RBP11.63□□□□□ -0.55
SS18-217ENST00000580958 SH2D3AQ9BRG2 576 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 VPS16Q9H269 839 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 MRPL44Q9H9J2 332 aaKnown RBP11.63□□□□□ -0.55
SS18-217ENST00000580958 RTN4Q9NQC3 1192 aaKnown RBP11.63□□□□□ -0.55
SS18-217ENST00000580958 DDX41Q9UJV9 622 aaKnown RBP11.63□□□□□ -0.55
SS18-217ENST00000580958 TLL2Q9Y6L7 1015 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 IVNS1ABPQ9Y6Y0 642 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 ZSWIM8A7E2V4 1837 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 SIP14410 1827 aa11.63□□□□□ -0.55
SS18-217ENST00000580958 GSTTP1A0A1W2PQM5 241 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 N4BP3O15049 544 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 STRNO43815 780 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 ATG7O95352 703 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 GCNT3O95395 438 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 FGFR1OPO95684 399 aaKnown RBP11.62□□□□□ -0.55
SS18-217ENST00000580958 TGFB3P10600 412 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 HOXD13P35453 343 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 PRKCEQ02156 737 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 LRMPQ12912 555 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 GRB14Q14449 540 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 BMT2Q1RMZ1 405 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 KCNV1Q6PIU1 500 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 FOXR2Q6PJQ5 311 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 LRRC55Q6ZSA7 311 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 ANO5Q75V66 913 aa11.62□□□□□ -0.55
SS18-217ENST00000580958 ABRAQ8N0Z2 381 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms