RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 PBX4Q9BYU1 374 aa21.89■■□□□ 1.09
SS18-209ENST00000578595 IFIH1Q9BYX4 1025 aaKnown RBP21.89■■□□□ 1.09
SS18-209ENST00000578595 TTC12Q9H892 705 aaPredicted RBP21.89■■□□□ 1.09
SS18-209ENST00000578595 TRPV2Q9Y5S1 764 aa21.89■■□□□ 1.09
SS18-209ENST00000578595 DKC1O60832 514 aaKnown RBP eCLIP21.88■■□□□ 1.09
SS18-209ENST00000578595 CHRNA1P02708 482 aa21.88■■□□□ 1.09
SS18-209ENST00000578595 WDR5P61964 334 aaKnown RBP21.88■■□□□ 1.09
SS18-209ENST00000578595 CYP4A11Q02928 519 aa21.88■■□□□ 1.09
SS18-209ENST00000578595 TBC1D8BQ0IIM8 1120 aa21.88■■□□□ 1.09
SS18-209ENST00000578595 TCTN1Q2MV58 587 aa21.88■■□□□ 1.09
SS18-209ENST00000578595 FAM26DQ5JW98 314 aa21.88■■□□□ 1.09
SS18-209ENST00000578595 B3GNT9Q6UX72 402 aa21.88■■□□□ 1.09
SS18-209ENST00000578595 RPAINQ86UA6 219 aa21.88■■□□□ 1.09
SS18-209ENST00000578595 MAP7D2Q96T17 732 aa21.88■■□□□ 1.09
SS18-209ENST00000578595 SH2D3AQ9BRG2 576 aa21.88■■□□□ 1.09
SS18-209ENST00000578595 ZBED2Q9BTP6 218 aa21.88■■□□□ 1.09
SS18-209ENST00000578595 SUGCTQ9HAC7 445 aa21.88■■□□□ 1.09
SS18-209ENST00000578595 AKT3Q9Y243 479 aa21.88■■□□□ 1.09
SS18-209ENST00000578595 ABHD14A-ACY1A0A1B0GW23 586 aa21.87■■□□□ 1.09
SS18-209ENST00000578595 TMEM150BA6NC51 233 aa21.87■■□□□ 1.09
SS18-209ENST00000578595 EFCAB14O75071 495 aa21.87■■□□□ 1.09
SS18-209ENST00000578595 C22orf31O95567 290 aa21.87■■□□□ 1.09
SS18-209ENST00000578595 QARSP47897 775 aaKnown RBP21.87■■□□□ 1.09
SS18-209ENST00000578595 CLCN3P51790 818 aa21.87■■□□□ 1.09
SS18-209ENST00000578595 NBR1Q14596 966 aa21.87■■□□□ 1.09
SS18-209ENST00000578595 XKR3Q5GH77 459 aa21.87■■□□□ 1.09
SS18-209ENST00000578595 LARP1BQ659C4 914 aaKnown RBP21.87■■□□□ 1.09
SS18-209ENST00000578595 FAM117BQ6P1L5 589 aa21.87■■□□□ 1.09
SS18-209ENST00000578595 SCLT1Q96NL6 688 aa21.87■■□□□ 1.09
SS18-209ENST00000578595 LXNQ9BS40 222 aa21.87■■□□□ 1.09
SS18-209ENST00000578595 OSBPL7Q9BZF2 842 aa21.87■■□□□ 1.09
SS18-209ENST00000578595 NKX2-4Q9H2Z4 354 aa21.87■■□□□ 1.09
SS18-209ENST00000578595 FOXD4L1Q9NU39 408 aa21.87■■□□□ 1.09
SS18-209ENST00000578595 LAMA2P24043 3122 aaKnown RBP21.87■■□□□ 1.09
SS18-209ENST00000578595 ZBTB42B2RXF5 422 aa21.86■■□□□ 1.09
SS18-209ENST00000578595 MAGEB2O15479 319 aa21.86■■□□□ 1.09
SS18-209ENST00000578595 SLC34A2O95436 690 aa21.86■■□□□ 1.09
SS18-209ENST00000578595 P4HBP07237 508 aaKnown RBP21.86■■□□□ 1.09
SS18-209ENST00000578595 OR52Z1P0C646 297 aa21.86■■□□□ 1.09
SS18-209ENST00000578595 TMOD1P28289 359 aa21.86■■□□□ 1.09
SS18-209ENST00000578595 DEFB103AP81534 67 aa21.86■■□□□ 1.09
SS18-209ENST00000578595 MGAT3Q09327 533 aa21.86■■□□□ 1.09
SS18-209ENST00000578595 EPHA7Q15375 998 aa21.86■■□□□ 1.09
SS18-209ENST00000578595 PLEKHG4Q58EX7 1191 aa21.86■■□□□ 1.09
SS18-209ENST00000578595 PLA2G4FQ68DD2 849 aa21.86■■□□□ 1.09
SS18-209ENST00000578595 EFCAB12Q6NXP0 572 aa21.86■■□□□ 1.09
SS18-209ENST00000578595 TMCO2Q7Z6W1 182 aaPredicted RBP21.86■■□□□ 1.09
SS18-209ENST00000578595 MYOCDQ8IZQ8 938 aa21.86■■□□□ 1.09
SS18-209ENST00000578595 LRRC71Q8N4P6 559 aa21.86■■□□□ 1.09
SS18-209ENST00000578595 DYDC2Q96IM9 177 aa21.86■■□□□ 1.09
SS18-209ENST00000578595 CCDC43Q96MW1 224 aaKnown RBP21.86■■□□□ 1.09
SS18-209ENST00000578595 TMEM60Q9H2L4 133 aa21.86■■□□□ 1.09
SS18-209ENST00000578595 SZT2Q5T011 3432 aa21.86■■□□□ 1.09
SS18-209ENST00000578595 AMHP03971 560 aa21.85■■□□□ 1.09
SS18-209ENST00000578595 VTNP04004 478 aa21.85■■□□□ 1.09
SS18-209ENST00000578595 CTTNQ14247 550 aaKnown RBP21.85■■□□□ 1.09
SS18-209ENST00000578595 LPIN1Q14693 890 aa21.85■■□□□ 1.09
SS18-209ENST00000578595 FBXO47Q5MNV8 452 aa21.85■■□□□ 1.09
SS18-209ENST00000578595 TPH2Q8IWU9 490 aa21.85■■□□□ 1.09
SS18-209ENST00000578595 NME8Q8N427 588 aa21.85■■□□□ 1.09
SS18-209ENST00000578595 APBB2Q92870 758 aa21.85■■□□□ 1.09
SS18-209ENST00000578595 CELF4Q9BZC1 486 aaKnown RBP21.85■■□□□ 1.09
SS18-209ENST00000578595 SLC28A3Q9HAS3 691 aa21.85■■□□□ 1.09
SS18-209ENST00000578595 RGL1Q9NZL6 768 aa21.85■■□□□ 1.09
SS18-209ENST00000578595 VPS37CA5D8V6 355 aaPredicted RBP21.84■■□□□ 1.09
SS18-209ENST00000578595 POTEMA6NI47 508 aa21.84■■□□□ 1.09
SS18-209ENST00000578595 K7ELQ4 463 aaPredicted RBP21.84■■□□□ 1.09
SS18-209ENST00000578595 MYOGP15173 224 aa21.84■■□□□ 1.09
SS18-209ENST00000578595 IBSPP21815 317 aaPredicted RBP21.84■■□□□ 1.09
SS18-209ENST00000578595 U2AF2P26368 475 aaKnown RBP eCLIP21.84■■□□□ 1.092e-7■■■■□ 23
SS18-209ENST00000578595 TRAPPC10P48553 1259 aa21.84■■□□□ 1.09
SS18-209ENST00000578595 KIZQ2M2Z5 673 aa21.84■■□□□ 1.09
SS18-209ENST00000578595 TSHZ1Q6ZSZ6 1077 aa21.84■■□□□ 1.09
SS18-209ENST00000578595 HERC6Q8IVU3 1022 aa21.84■■□□□ 1.09
SS18-209ENST00000578595 KIAA0319LQ8IZA0 1049 aa21.84■■□□□ 1.09
SS18-209ENST00000578595 PHOSPHO2Q8TCD6 241 aa21.84■■□□□ 1.09
SS18-209ENST00000578595 YBX2Q9Y2T7 364 aaKnown RBP21.84■■□□□ 1.09
SS18-209ENST00000578595 TLL1O43897 1013 aa21.83■■□□□ 1.09
SS18-209ENST00000578595 CD52P31358 61 aa21.83■■□□□ 1.09
SS18-209ENST00000578595 SPIRE1Q08AE8 756 aa21.83■■□□□ 1.09
SS18-209ENST00000578595 PAK2Q13177 524 aa21.83■■□□□ 1.09
SS18-209ENST00000578595 ORC2Q13416 577 aaPredicted RBP21.83■■□□□ 1.09
SS18-209ENST00000578595 TMEM266Q2M3C6 531 aa21.83■■□□□ 1.09
SS18-209ENST00000578595 PPP2R2DQ66LE6 453 aa21.83■■□□□ 1.09
SS18-209ENST00000578595 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.83■■□□□ 1.09
SS18-209ENST00000578595 HSCBQ8IWL3 235 aa21.83■■□□□ 1.09
SS18-209ENST00000578595 ZNF668Q96K58 619 aaPredicted RBP21.83■■□□□ 1.09
SS18-209ENST00000578595 MTMR9Q96QG7 549 aa21.83■■□□□ 1.09
SS18-209ENST00000578595 EIF2AK1Q9BQI3 630 aaKnown RBP21.83■■□□□ 1.09
SS18-209ENST00000578595 ZNF576Q9H609 170 aa21.83■■□□□ 1.09
SS18-209ENST00000578595 BMP2KQ9NSY1 1161 aaPredicted RBP21.83■■□□□ 1.09
SS18-209ENST00000578595 PCDHA11Q9Y5I1 949 aa21.83■■□□□ 1.09
SS18-209ENST00000578595 NLRC5Q86WI3 1866 aa21.83■■□□□ 1.08
SS18-209ENST00000578595 TMEM265A0A087WTH1 108 aa21.82■■□□□ 1.08
SS18-209ENST00000578595 UPP2O95045 317 aa21.82■■□□□ 1.08
SS18-209ENST00000578595 TECP42680 631 aa21.82■■□□□ 1.08
SS18-209ENST00000578595 CUL4AQ13619 759 aa21.82■■□□□ 1.08
SS18-209ENST00000578595 CEP170P1Q96L14 293 aa21.82■■□□□ 1.08
SS18-209ENST00000578595 OSMRQ99650 979 aa21.82■■□□□ 1.08
SS18-209ENST00000578595 TTYH1Q9H313 450 aaPredicted RBP21.82■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms