RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 GAS2O43903 313 aaKnown RBP16.96■□□□□ 0.31
SS18-206ENST00000577572 MSCO60682 206 aa16.96■□□□□ 0.31
SS18-206ENST00000577572 TBCAO75347 108 aaKnown RBP16.96■□□□□ 0.31
SS18-206ENST00000577572 MAPTP10636 758 aaKnown RBP16.96■□□□□ 0.31
SS18-206ENST00000577572 ABCD1P33897 745 aa16.96■□□□□ 0.31
SS18-206ENST00000577572 ZNF131P52739 623 aa16.96■□□□□ 0.31
SS18-206ENST00000577572 RTP1P59025 263 aa16.96■□□□□ 0.31
SS18-206ENST00000577572 STIM1Q13586 685 aa16.96■□□□□ 0.31
SS18-206ENST00000577572 DHX8Q14562 1220 aaKnown RBP16.96■□□□□ 0.31
SS18-206ENST00000577572 XKR9Q5GH70 373 aa16.96■□□□□ 0.31
SS18-206ENST00000577572 FOXR2Q6PJQ5 311 aa16.96■□□□□ 0.31
SS18-206ENST00000577572 TLK2Q86UE8 772 aa16.96■□□□□ 0.31
SS18-206ENST00000577572 AFG1LQ8WV93 481 aa16.96■□□□□ 0.31
SS18-206ENST00000577572 ERCC4Q92889 916 aaPredicted RBP16.96■□□□□ 0.31
SS18-206ENST00000577572 COPS5Q92905 334 aa16.96■□□□□ 0.31
SS18-206ENST00000577572 CEP170P1Q96L14 293 aa16.96■□□□□ 0.31
SS18-206ENST00000577572 DRC1Q96MC2 740 aa16.96■□□□□ 0.31
SS18-206ENST00000577572 SPC25Q9HBM1 224 aa16.96■□□□□ 0.31
SS18-206ENST00000577572 CYP26B1Q9NR63 512 aa16.96■□□□□ 0.31
SS18-206ENST00000577572 OLFML3Q9NRN5 406 aa16.96■□□□□ 0.31
SS18-206ENST00000577572 PANK4Q9NVE7 773 aa16.96■□□□□ 0.31
SS18-206ENST00000577572 MCM3APO60318 1980 aa16.96■□□□□ 0.31
SS18-206ENST00000577572 COL1A2P08123 1366 aa16.95■□□□□ 0.3
SS18-206ENST00000577572 GOLGA6L3A6NEY3 463 aa16.95■□□□□ 0.3
SS18-206ENST00000577572 DYNC1LI2O43237 492 aaPredicted RBP16.95■□□□□ 0.3
SS18-206ENST00000577572 HBP1O60381 514 aa16.95■□□□□ 0.3
SS18-206ENST00000577572 ECM2O94769 699 aaPredicted RBP16.95■□□□□ 0.3
SS18-206ENST00000577572 LGALS2P05162 132 aa16.95■□□□□ 0.3
SS18-206ENST00000577572 MMP3P08254 477 aa16.95■□□□□ 0.3
SS18-206ENST00000577572 ATP4AP20648 1035 aa16.95■□□□□ 0.3
SS18-206ENST00000577572 ZNF165P49910 485 aa16.95■□□□□ 0.3
SS18-206ENST00000577572 GJA9P57773 515 aa16.95■□□□□ 0.3
SS18-206ENST00000577572 TARBP2Q15633 366 aaKnown RBP16.95■□□□□ 0.3
SS18-206ENST00000577572 ANO6Q4KMQ2 910 aa16.95■□□□□ 0.3
SS18-206ENST00000577572 PRAMEF19Q5SWL8 479 aa16.95■□□□□ 0.3
SS18-206ENST00000577572 DYMQ7RTS9 669 aa16.95■□□□□ 0.3
SS18-206ENST00000577572 KIFAP3Q92845 792 aa16.95■□□□□ 0.3
SS18-206ENST00000577572 REEP2Q9BRK0 252 aa16.95■□□□□ 0.3
SS18-206ENST00000577572 RUSC1Q9BVN2 902 aa16.95■□□□□ 0.3
SS18-206ENST00000577572 UPF3AQ9H1J1 476 aaKnown RBP16.95■□□□□ 0.3
SS18-206ENST00000577572 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.94■□□□□ 0.3
SS18-206ENST00000577572 SMTNL1A8MU46 457 aa16.94■□□□□ 0.3
SS18-206ENST00000577572 BIN1O00499 593 aa16.94■□□□□ 0.3
SS18-206ENST00000577572 IKBKBO14920 756 aa16.94■□□□□ 0.3
SS18-206ENST00000577572 ZEB2O60315 1214 aa16.94■□□□□ 0.3
SS18-206ENST00000577572 RARBP10826 455 aa16.94■□□□□ 0.3
SS18-206ENST00000577572 IDEP14735 1019 aa16.94■□□□□ 0.3
SS18-206ENST00000577572 BMP6P22004 513 aa16.94■□□□□ 0.3
SS18-206ENST00000577572 CASP1P29466 404 aa16.94■□□□□ 0.3
SS18-206ENST00000577572 CAP1Q01518 475 aa16.94■□□□□ 0.3
SS18-206ENST00000577572 CACNB2Q08289 660 aaPredicted RBP16.94■□□□□ 0.3
SS18-206ENST00000577572 ALCAMQ13740 583 aa16.94■□□□□ 0.3
SS18-206ENST00000577572 UVSSAQ2YD98 709 aa16.94■□□□□ 0.3
SS18-206ENST00000577572 DPCR1Q3MIW9 517 aa16.94■□□□□ 0.3
SS18-206ENST00000577572 ZNF484Q5JVG2 852 aa16.94■□□□□ 0.3
SS18-206ENST00000577572 KCNN1Q92952 543 aa16.94■□□□□ 0.3
SS18-206ENST00000577572 DHTKD1Q96HY7 919 aaPredicted RBP16.94■□□□□ 0.3
SS18-206ENST00000577572 PARVGQ9HBI0 331 aa16.94■□□□□ 0.3
SS18-206ENST00000577572 PDLIM7Q9NR12 457 aa16.94■□□□□ 0.3
SS18-206ENST00000577572 LARSQ9P2J5 1176 aaKnown RBP16.94■□□□□ 0.3
SS18-206ENST00000577572 SEPT9Q9UHD8 586 aaPredicted RBP16.94■□□□□ 0.3
SS18-206ENST00000577572 TELO2Q9Y4R8 837 aa16.94■□□□□ 0.3
SS18-206ENST00000577572 ZBTB39O15060 712 aa16.93■□□□□ 0.3
SS18-206ENST00000577572 SORBS3O60504 671 aa16.93■□□□□ 0.3
SS18-206ENST00000577572 FAM13AO94988 1023 aa16.93■□□□□ 0.3
SS18-206ENST00000577572 PRKAR2AP13861 404 aaKnown RBP16.93■□□□□ 0.3
SS18-206ENST00000577572 COASYQ13057 564 aa16.93■□□□□ 0.3
SS18-206ENST00000577572 HERC4Q5GLZ8 1057 aaPredicted RBP16.93■□□□□ 0.3
SS18-206ENST00000577572 FAM26FQ5R3K3 315 aa16.93■□□□□ 0.3
SS18-206ENST00000577572 TMEM63BQ5T3F8 832 aa16.93■□□□□ 0.3
SS18-206ENST00000577572 STXBP4Q6ZWJ1 553 aa16.93■□□□□ 0.3
SS18-206ENST00000577572 GAS2L3Q86XJ1 694 aa16.93■□□□□ 0.3
SS18-206ENST00000577572 GUF1Q8N442 669 aaKnown RBP16.93■□□□□ 0.3
SS18-206ENST00000577572 TRPV1Q8NER1 839 aa16.93■□□□□ 0.3
SS18-206ENST00000577572 SLC7A3Q8WY07 619 aa16.93■□□□□ 0.3
SS18-206ENST00000577572 C16orf70Q9BSU1 422 aa16.93■□□□□ 0.3
SS18-206ENST00000577572 KATNAL1Q9BW62 490 aa16.93■□□□□ 0.3
SS18-206ENST00000577572 DNAJC25Q9H1X3 360 aa16.93■□□□□ 0.3
SS18-206ENST00000577572 DHX33Q9H6R0 707 aaKnown RBP16.93■□□□□ 0.3
SS18-206ENST00000577572 ATP6V0A4Q9HBG4 840 aa16.93■□□□□ 0.3
SS18-206ENST00000577572 H0YCG3 227 aa16.92■□□□□ 0.3
SS18-206ENST00000577572 H3BRB1 525 aa16.92■□□□□ 0.3
SS18-206ENST00000577572 PSMA7O14818 248 aa16.92■□□□□ 0.3
SS18-206ENST00000577572 MAGEB2O15479 319 aa16.92■□□□□ 0.3
SS18-206ENST00000577572 ADCY6O43306 1168 aa16.92■□□□□ 0.3
SS18-206ENST00000577572 F2P00734 622 aa16.92■□□□□ 0.3
SS18-206ENST00000577572 MRE11P49959 708 aa16.92■□□□□ 0.3
SS18-206ENST00000577572 PLCB4Q15147 1175 aa16.92■□□□□ 0.3
SS18-206ENST00000577572 UTP14CQ5TAP6 766 aaKnown RBP16.92■□□□□ 0.3
SS18-206ENST00000577572 ADSSL1Q8N142 457 aa16.92■□□□□ 0.3
SS18-206ENST00000577572 ENOX1Q8TC92 643 aaKnown RBP16.92■□□□□ 0.3
SS18-206ENST00000577572 CEP89Q96ST8 783 aa16.92■□□□□ 0.3
SS18-206ENST00000577572 ST6GALNAC4Q9H4F1 302 aa16.92■□□□□ 0.3
SS18-206ENST00000577572 TUT1Q9H6E5 874 aaKnown RBP16.92■□□□□ 0.3
SS18-206ENST00000577572 UBE4BO95155 1302 aa16.92■□□□□ 0.3
SS18-206ENST00000577572 A0A087WWV3 80 aa16.91■□□□□ 0.3
SS18-206ENST00000577572 RRN3P2A6NIE6 340 aa16.91■□□□□ 0.3
SS18-206ENST00000577572 PPP1R3GB7ZBB8 358 aa16.91■□□□□ 0.3
SS18-206ENST00000577572 MAFO75444 373 aaPredicted RBP16.91■□□□□ 0.3
SS18-206ENST00000577572 PLS3P13797 630 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms