RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 ABHD15Q6UXT9 468 aa15.54■□□□□ 0.08
CCDC40-216ENST00000576241 ADHFE1Q8IWW8 467 aa15.54■□□□□ 0.08
CCDC40-216ENST00000576241 CKAP2LQ8IYA6 745 aa15.54■□□□□ 0.08
CCDC40-216ENST00000576241 ATP8B4Q8TF62 1192 aa15.54■□□□□ 0.08
CCDC40-216ENST00000576241 CRYGNQ8WXF5 182 aa15.54■□□□□ 0.08
CCDC40-216ENST00000576241 SLC26A6Q9BXS9 759 aa15.54■□□□□ 0.08
CCDC40-216ENST00000576241 FTHL17Q9BXU8 183 aa15.54■□□□□ 0.08
CCDC40-216ENST00000576241 ZNF302Q9NR11 478 aa15.54■□□□□ 0.08
CCDC40-216ENST00000576241 PRKAG3Q9UGI9 489 aa15.54■□□□□ 0.08
CCDC40-216ENST00000576241 RWDD3Q9Y3V2 267 aa15.54■□□□□ 0.08
CCDC40-216ENST00000576241 IGSF9BQ9UPX0 1349 aa15.53■□□□□ 0.08
CCDC40-216ENST00000576241 CACNA1HO95180 2353 aa15.53■□□□□ 0.08
CCDC40-216ENST00000576241 EPB41L2O43491 1005 aaKnown RBP15.53■□□□□ 0.08
CCDC40-216ENST00000576241 IFNAR1P17181 557 aa15.53■□□□□ 0.08
CCDC40-216ENST00000576241 KLRC1P26715 233 aa15.53■□□□□ 0.08
CCDC40-216ENST00000576241 PDIA3P30101 505 aaKnown RBP15.53■□□□□ 0.08
CCDC40-216ENST00000576241 KRT76Q01546 638 aa15.53■□□□□ 0.08
CCDC40-216ENST00000576241 PRR16Q569H4 304 aa15.53■□□□□ 0.08
CCDC40-216ENST00000576241 SWSAP1Q6NVH7 229 aa15.53■□□□□ 0.08
CCDC40-216ENST00000576241 RUFY3Q7L099 469 aa15.53■□□□□ 0.08
CCDC40-216ENST00000576241 CCDC60Q8IWA6 550 aaPredicted RBP15.53■□□□□ 0.08
CCDC40-216ENST00000576241 TRIM22Q8IYM9 498 aa15.53■□□□□ 0.08
CCDC40-216ENST00000576241 CELF4Q9BZC1 486 aaKnown RBP15.53■□□□□ 0.08
CCDC40-216ENST00000576241 AGO3Q9H9G7 860 aaKnown RBP15.53■□□□□ 0.08
CCDC40-216ENST00000576241 NCOA5Q9HCD5 579 aaKnown RBP15.53■□□□□ 0.08
CCDC40-216ENST00000576241 KAT6AQ92794 2004 aa15.53■□□□□ 0.08
CCDC40-216ENST00000576241 COL1A2P08123 1366 aa15.52■□□□□ 0.08
CCDC40-216ENST00000576241 DHX15O43143 795 aaKnown RBP15.52■□□□□ 0.08
CCDC40-216ENST00000576241 PPFIA3O75145 1194 aa15.52■□□□□ 0.08
CCDC40-216ENST00000576241 NEFLP07196 543 aa15.52■□□□□ 0.08
CCDC40-216ENST00000576241 PSAPP07602 524 aa15.52■□□□□ 0.08
CCDC40-216ENST00000576241 CCT2P78371 535 aaKnown RBP15.52■□□□□ 0.08
CCDC40-216ENST00000576241 BTG3Q14201 252 aaPredicted RBP15.52■□□□□ 0.08
CCDC40-216ENST00000576241 NTRK3Q16288 839 aa15.52■□□□□ 0.08
CCDC40-216ENST00000576241 HERC4Q5GLZ8 1057 aaPredicted RBP15.52■□□□□ 0.08
CCDC40-216ENST00000576241 ZNF484Q5JVG2 852 aa15.52■□□□□ 0.08
CCDC40-216ENST00000576241 ZNF746Q6NUN9 644 aaPredicted RBP15.52■□□□□ 0.08
CCDC40-216ENST00000576241 SMAP1Q8IYB5 467 aaPredicted RBP15.52■□□□□ 0.08
CCDC40-216ENST00000576241 RASGRP4Q8TDF6 673 aa15.52■□□□□ 0.08
CCDC40-216ENST00000576241 PRRX2Q99811 253 aa15.52■□□□□ 0.08
CCDC40-216ENST00000576241 C11orf84Q9BUA3 381 aaPredicted RBP15.52■□□□□ 0.08
CCDC40-216ENST00000576241 VPS54Q9P1Q0 977 aa15.52■□□□□ 0.08
CCDC40-216ENST00000576241 PADI3Q9ULW8 664 aa15.52■□□□□ 0.08
CCDC40-216ENST00000576241 FAM50BQ9Y247 325 aa15.52■□□□□ 0.08
CCDC40-216ENST00000576241 SAMM50Q9Y512 469 aa15.52■□□□□ 0.08
CCDC40-216ENST00000576241 CYP46A1Q9Y6A2 500 aa15.52■□□□□ 0.08
CCDC40-216ENST00000576241 KDM3AQ9Y4C1 1321 aa15.51■□□□□ 0.07
CCDC40-216ENST00000576241 CPLX1O14810 134 aa15.51■□□□□ 0.07
CCDC40-216ENST00000576241 ADAMTS3O15072 1205 aa15.51■□□□□ 0.07
CCDC40-216ENST00000576241 RB1P06400 928 aa15.51■□□□□ 0.07
CCDC40-216ENST00000576241 STAG3L1P0CL83 205 aa15.51■□□□□ 0.07
CCDC40-216ENST00000576241 BMPR1AP36894 532 aa15.51■□□□□ 0.07
CCDC40-216ENST00000576241 EVCP57679 992 aa15.51■□□□□ 0.07
CCDC40-216ENST00000576241 NLRP5P59047 1200 aa15.51■□□□□ 0.07
CCDC40-216ENST00000576241 EP400NLQ6ZTU2 488 aa15.51■□□□□ 0.07
CCDC40-216ENST00000576241 BMP8AQ7Z5Y6 402 aa15.51■□□□□ 0.07
CCDC40-216ENST00000576241 NPAS4Q8IUM7 802 aa15.51■□□□□ 0.07
CCDC40-216ENST00000576241 BANK1Q8NDB2 785 aa15.51■□□□□ 0.07
CCDC40-216ENST00000576241 PBXIP1Q96AQ6 731 aa15.51■□□□□ 0.07
CCDC40-216ENST00000576241 ZSWIM6Q9HCJ5 1215 aa15.51■□□□□ 0.07
CCDC40-216ENST00000576241 SH3GLB2Q9NR46 395 aa15.51■□□□□ 0.07
CCDC40-216ENST00000576241 GINS2Q9Y248 185 aa15.51■□□□□ 0.07
CCDC40-216ENST00000576241 C5orf67F2Z3F1 127 aa15.5■□□□□ 0.07
CCDC40-216ENST00000576241 DGKIO75912 1065 aa15.5■□□□□ 0.07
CCDC40-216ENST00000576241 CIITAP33076 1130 aa15.5■□□□□ 0.07
CCDC40-216ENST00000576241 SSRP1Q08945 709 aaKnown RBP15.5■□□□□ 0.07
CCDC40-216ENST00000576241 ODR4Q5SWX8 454 aa15.5■□□□□ 0.07
CCDC40-216ENST00000576241 FAM43BQ6ZT52 329 aaPredicted RBP15.5■□□□□ 0.07
CCDC40-216ENST00000576241 ERMP1Q7Z2K6 904 aa15.5■□□□□ 0.07
CCDC40-216ENST00000576241 LINC01599Q8WXQ3 324 aa15.5■□□□□ 0.07
CCDC40-216ENST00000576241 BBXQ8WY36 941 aaPredicted RBP15.5■□□□□ 0.07
CCDC40-216ENST00000576241 EDAQ92838 391 aa15.5■□□□□ 0.07
CCDC40-216ENST00000576241 CLP1Q92989 425 aaKnown RBP15.5■□□□□ 0.07
CCDC40-216ENST00000576241 ZNF689Q96CS4 500 aaPredicted RBP15.5■□□□□ 0.07
CCDC40-216ENST00000576241 NSUN3Q9H649 340 aaKnown RBP15.5■□□□□ 0.07
CCDC40-216ENST00000576241 RC3H2Q9HBD1 1191 aaKnown RBP15.5■□□□□ 0.07
CCDC40-216ENST00000576241 CEP131Q9UPN4 1083 aa15.5■□□□□ 0.07
CCDC40-216ENST00000576241 PCDHA10Q9Y5I2 948 aa15.5■□□□□ 0.07
CCDC40-216ENST00000576241 MAFBQ9Y5Q3 323 aaPredicted RBP15.5■□□□□ 0.07
CCDC40-216ENST00000576241 KMT2EQ8IZD2 1858 aa15.5■□□□□ 0.07
CCDC40-216ENST00000576241 RIF1Q5UIP0 2472 aaKnown RBP15.49■□□□□ 0.07
CCDC40-216ENST00000576241 WDR64B1ANS9 1081 aa15.49■□□□□ 0.07
CCDC40-216ENST00000576241 NFX1Q12986 1120 aaKnown RBP15.49■□□□□ 0.07
CCDC40-216ENST00000576241 TOB2Q14106 344 aaPredicted RBP15.49■□□□□ 0.07
CCDC40-216ENST00000576241 TMEM266Q2M3C6 531 aa15.49■□□□□ 0.07
CCDC40-216ENST00000576241 TCEAL5Q5H9L2 206 aa15.49■□□□□ 0.07
CCDC40-216ENST00000576241 CPLX2Q6PUV4 134 aaKnown RBP15.49■□□□□ 0.07
CCDC40-216ENST00000576241 TRMT1LQ7Z2T5 733 aaKnown RBP15.49■□□□□ 0.07
CCDC40-216ENST00000576241 RNF135Q8IUD6 432 aa15.49■□□□□ 0.07
CCDC40-216ENST00000576241 CMTR2Q8IYT2 770 aaKnown RBP15.49■□□□□ 0.07
CCDC40-216ENST00000576241 KIAA0319LQ8IZA0 1049 aa15.49■□□□□ 0.07
CCDC40-216ENST00000576241 PABPC5Q96DU9 382 aaKnown RBP15.49■□□□□ 0.07
CCDC40-216ENST00000576241 FAM167AQ96KS9 214 aa15.49■□□□□ 0.07
CCDC40-216ENST00000576241 C22orf23Q9BZE7 217 aa15.49■□□□□ 0.07
CCDC40-216ENST00000576241 LMAN2LQ9H0V9 348 aa15.49■□□□□ 0.07
CCDC40-216ENST00000576241 ALG13Q9NP73 1137 aaKnown RBP15.49■□□□□ 0.07
CCDC40-216ENST00000576241 RNF216Q9NWF9 866 aaPredicted RBP15.49■□□□□ 0.07
CCDC40-216ENST00000576241 GABBR1Q9UBS5 961 aa15.49■□□□□ 0.07
CCDC40-216ENST00000576241 LRFN2Q9ULH4 789 aa15.49■□□□□ 0.07
CCDC40-216ENST00000576241 CACNA1BQ00975 2339 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms