RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 C1QTNF3Q9BXJ4 246 aa4.64□□□□□ -1.67
NUP88-209ENST00000574855 SAMD15Q9P1V8 674 aa4.64□□□□□ -1.67
NUP88-209ENST00000574855 ST6GALNAC2Q9UJ37 374 aa4.64□□□□□ -1.67
NUP88-209ENST00000574855 MYRFQ9Y2G1 1151 aa4.64□□□□□ -1.67
NUP88-209ENST00000574855 ASB1Q9Y576 335 aa4.64□□□□□ -1.67
NUP88-209ENST00000574855 PRAMEF22A3QJZ6 481 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 GOLGA6L22H0YM25 854 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 M0R2C6 588 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 PPP1R12AO14974 1030 aaPredicted RBP4.63□□□□□ -1.67
NUP88-209ENST00000574855 OPA1O60313 960 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 MPIG6BO95866 241 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 ZNF888P0CJ79 500 aaPredicted RBP4.63□□□□□ -1.67
NUP88-209ENST00000574855 ZBTB48P10074 688 aaPredicted RBP4.63□□□□□ -1.67
NUP88-209ENST00000574855 INSRRP14616 1297 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 ZNF20P17024 532 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 FLT3P36888 993 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 ETV4P43268 484 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 KRTAP10-2P60368 255 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 IRF9Q00978 393 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 TM4SF20Q53R12 229 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 UBE2R2Q712K3 238 aaPredicted RBP4.63□□□□□ -1.67
NUP88-209ENST00000574855 NOL8Q76FK4 1167 aaKnown RBP4.63□□□□□ -1.67
NUP88-209ENST00000574855 OTOP2Q7RTS6 562 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 GGNQ86UU5 652 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 CALML6Q8TD86 181 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 DVL3Q92997 716 aaPredicted RBP4.63□□□□□ -1.67
NUP88-209ENST00000574855 AMNQ9BXJ7 453 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 ZDHHC5Q9C0B5 715 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 OR10A5Q9H207 317 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 DEF6Q9H4E7 631 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 CABP5Q9NP86 173 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 PTPN22Q9Y2R2 807 aa4.63□□□□□ -1.67
NUP88-209ENST00000574855 TNPO3Q9Y5L0 923 aaKnown RBP4.63□□□□□ -1.67
NUP88-209ENST00000574855 A0A0G2JNJ9 132 aa4.62□□□□□ -1.67
NUP88-209ENST00000574855 RASSF10A6NK89 507 aa4.62□□□□□ -1.67
NUP88-209ENST00000574855 MARCH6O60337 910 aa4.62□□□□□ -1.67
NUP88-209ENST00000574855 ASMTLO95671 621 aa4.62□□□□□ -1.67
NUP88-209ENST00000574855 HMGCRP04035 888 aa4.62□□□□□ -1.67
NUP88-209ENST00000574855 ADCY8P40145 1251 aa4.62□□□□□ -1.67
NUP88-209ENST00000574855 MECP2P51608 486 aaKnown RBP4.62□□□□□ -1.67
NUP88-209ENST00000574855 KCNQ1P51787 676 aa4.62□□□□□ -1.67
NUP88-209ENST00000574855 RRADP55042 308 aa4.62□□□□□ -1.67
NUP88-209ENST00000574855 RAC3P60763 192 aa4.62□□□□□ -1.67
NUP88-209ENST00000574855 CD83Q01151 205 aa4.62□□□□□ -1.67
NUP88-209ENST00000574855 EIF4HQ15056 248 aaKnown RBP4.62□□□□□ -1.67
NUP88-209ENST00000574855 CC2D1AQ6P1N0 951 aaPredicted RBP4.62□□□□□ -1.67
NUP88-209ENST00000574855 LRSAM1Q6UWE0 723 aa4.62□□□□□ -1.67
NUP88-209ENST00000574855 GIMAP8Q8ND71 665 aaPredicted RBP4.62□□□□□ -1.67
NUP88-209ENST00000574855 DNERQ8NFT8 737 aa4.62□□□□□ -1.67
NUP88-209ENST00000574855 ERCC4Q92889 916 aaPredicted RBP4.62□□□□□ -1.67
NUP88-209ENST00000574855 E2F7Q96AV8 911 aa4.62□□□□□ -1.67
NUP88-209ENST00000574855 NEIL1Q96FI4 390 aaPredicted RBP4.62□□□□□ -1.67
NUP88-209ENST00000574855 LRRC37BQ96QE4 947 aa4.62□□□□□ -1.67
NUP88-209ENST00000574855 CDK5RAP1Q96SZ6 601 aaKnown RBP4.62□□□□□ -1.67
NUP88-209ENST00000574855 MEGF9Q9H1U4 602 aa4.62□□□□□ -1.67
NUP88-209ENST00000574855 KANSL2Q9H9L4 492 aa4.62□□□□□ -1.67
NUP88-209ENST00000574855 TMEM260Q9NX78 707 aa4.62□□□□□ -1.67
NUP88-209ENST00000574855 Q9UFV3 132 aa4.62□□□□□ -1.67
NUP88-209ENST00000574855 PTPDC1A2A3K4 754 aa4.61□□□□□ -1.67
NUP88-209ENST00000574855 PATE3B3GLJ2 98 aa4.61□□□□□ -1.67
NUP88-209ENST00000574855 ZNF623O75123 536 aa4.61□□□□□ -1.67
NUP88-209ENST00000574855 RFPL3O75679 317 aa4.61□□□□□ -1.67
NUP88-209ENST00000574855 DNAJC8O75937 253 aaPredicted RBP4.61□□□□□ -1.67
NUP88-209ENST00000574855 GLRX3O76003 335 aaKnown RBP4.61□□□□□ -1.67
NUP88-209ENST00000574855 KRT37O76014 449 aa4.61□□□□□ -1.67
NUP88-209ENST00000574855 APEX1P27695 318 aaKnown RBP4.61□□□□□ -1.67
NUP88-209ENST00000574855 MEOX1P50221 254 aa4.61□□□□□ -1.67
NUP88-209ENST00000574855 PUM1Q14671 1186 aaKnown RBP eCLIP4.61□□□□□ -1.67
NUP88-209ENST00000574855 ICAM4Q14773 271 aa4.61□□□□□ -1.67
NUP88-209ENST00000574855 TCEA2Q15560 299 aa4.61□□□□□ -1.67
NUP88-209ENST00000574855 CATSPEREQ5SY80 951 aa4.61□□□□□ -1.67
NUP88-209ENST00000574855 PIK3R6Q5UE93 754 aa4.61□□□□□ -1.67
NUP88-209ENST00000574855 KANK2Q63ZY3 851 aa4.61□□□□□ -1.67
NUP88-209ENST00000574855 FSTL4Q6MZW2 842 aa4.61□□□□□ -1.67
NUP88-209ENST00000574855 TAX1BP1Q86VP1 789 aa4.61□□□□□ -1.67
NUP88-209ENST00000574855 CHST14Q8NCH0 376 aa4.61□□□□□ -1.67
NUP88-209ENST00000574855 GNRHR2Q96P88 292 aa4.61□□□□□ -1.67
NUP88-209ENST00000574855 KLC2Q9H0B6 622 aa4.61□□□□□ -1.67
NUP88-209ENST00000574855 CD248Q9HCU0 757 aa4.61□□□□□ -1.67
NUP88-209ENST00000574855 ACSS2Q9NR19 701 aa4.61□□□□□ -1.67
NUP88-209ENST00000574855 CDC42EP3Q9UKI2 254 aa4.61□□□□□ -1.67
NUP88-209ENST00000574855 NR2E1Q9Y466 385 aa4.61□□□□□ -1.67
NUP88-209ENST00000574855 LOC102724159A0A0B4J2E5 919 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 C1QTNF3-AMACRE9PGA6 284 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 H7C1D1 291 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 TRAF5O00463 557 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 CYP17A1P05093 508 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 JMJD7P0C870 316 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 CR2P20023 1033 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 KIF11P52732 1056 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 MAP3K12Q12852 859 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 PABPC4Q13310 644 aaKnown RBP eCLIP4.6□□□□□ -1.67
NUP88-209ENST00000574855 MOGSQ13724 837 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 ZNF460Q14592 562 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 PWP2Q15269 919 aaKnown RBP4.6□□□□□ -1.67
NUP88-209ENST00000574855 ZNF174Q15697 407 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 RNF151Q2KHN1 245 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 CFAP100Q494V2 611 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 HS1BP3Q53T59 392 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 TRIM68Q6AZZ1 485 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms