RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ZNF302Q9NR11 478 aa23.97■■□□□ 1.43
VPS53-216ENST00000574029 FNDC1Q4ZHG4 1894 aaPredicted RBP23.96■■□□□ 1.43
VPS53-216ENST00000574029 PLXNA4Q9HCM2 1894 aa23.96■■□□□ 1.43
VPS53-216ENST00000574029 CSPG5O95196 566 aa23.96■■□□□ 1.43
VPS53-216ENST00000574029 SARSP49591 514 aaKnown RBP23.96■■□□□ 1.43
VPS53-216ENST00000574029 GATMP50440 423 aa23.96■■□□□ 1.43
VPS53-216ENST00000574029 NFX1Q12986 1120 aaKnown RBP23.96■■□□□ 1.43
VPS53-216ENST00000574029 SMAD4Q13485 552 aaKnown RBP23.96■■□□□ 1.43
VPS53-216ENST00000574029 ZNF484Q5JVG2 852 aa23.96■■□□□ 1.43
VPS53-216ENST00000574029 JAKMIP3Q5VZ66 844 aa23.96■■□□□ 1.43
VPS53-216ENST00000574029 MIS18BP1Q6P0N0 1132 aa23.96■■□□□ 1.43
VPS53-216ENST00000574029 CDHR5Q9HBB8 845 aa23.96■■□□□ 1.43
VPS53-216ENST00000574029 LRFN2Q9ULH4 789 aa23.96■■□□□ 1.43
VPS53-216ENST00000574029 NOC2LQ9Y3T9 749 aaKnown RBP23.96■■□□□ 1.43
VPS53-216ENST00000574029 EVPLQ92817 2033 aa23.95■■□□□ 1.42
VPS53-216ENST00000574029 ESYT2A0FGR8 921 aa23.95■■□□□ 1.42
VPS53-216ENST00000574029 ZBTB42B2RXF5 422 aa23.95■■□□□ 1.42
VPS53-216ENST00000574029 IPO5O00410 1097 aaKnown RBP23.95■■□□□ 1.42
VPS53-216ENST00000574029 MGEA5O60502 916 aa23.95■■□□□ 1.42
VPS53-216ENST00000574029 HMGB1P09429 215 aaKnown RBP23.95■■□□□ 1.42
VPS53-216ENST00000574029 ATP4AP20648 1035 aa23.95■■□□□ 1.42
VPS53-216ENST00000574029 IRS1P35568 1242 aa23.95■■□□□ 1.42
VPS53-216ENST00000574029 ADD1P35611 737 aaKnown RBP23.95■■□□□ 1.42
VPS53-216ENST00000574029 SWSAP1Q6NVH7 229 aa23.95■■□□□ 1.42
VPS53-216ENST00000574029 PDXDC2PQ6P474 469 aa23.95■■□□□ 1.42
VPS53-216ENST00000574029 POF1BQ8WVV4 589 aa23.95■■□□□ 1.42
VPS53-216ENST00000574029 TMEM40Q8WWA1 233 aa23.95■■□□□ 1.42
VPS53-216ENST00000574029 PPP2R3CQ969Q6 453 aa23.95■■□□□ 1.42
VPS53-216ENST00000574029 MSLNLQ96KJ4 702 aa23.95■■□□□ 1.42
VPS53-216ENST00000574029 UPF3BQ9BZI7 483 aaKnown RBP23.95■■□□□ 1.42
VPS53-216ENST00000574029 ZMYND12Q9H0C1 365 aa23.95■■□□□ 1.42
VPS53-216ENST00000574029 CD207Q9UJ71 328 aa23.95■■□□□ 1.42
VPS53-216ENST00000574029 RPS6KA5O75582 802 aa23.94■■□□□ 1.42
VPS53-216ENST00000574029 ODR4Q5SWX8 454 aa23.94■■□□□ 1.42
VPS53-216ENST00000574029 MCTP2Q6DN12 878 aa23.94■■□□□ 1.42
VPS53-216ENST00000574029 ADGRD2Q7Z7M1 963 aa23.94■■□□□ 1.42
VPS53-216ENST00000574029 POP1Q99575 1024 aaKnown RBP23.94■■□□□ 1.42
VPS53-216ENST00000574029 RGS18Q9NS28 235 aa23.94■■□□□ 1.42
VPS53-216ENST00000574029 C1orf112Q9NSG2 853 aa23.94■■□□□ 1.42
VPS53-216ENST00000574029 TBC1D22BQ9NU19 505 aa23.94■■□□□ 1.42
VPS53-216ENST00000574029 GINS2Q9Y248 185 aa23.94■■□□□ 1.42
VPS53-216ENST00000574029 PCDHB7Q9Y5E2 793 aa23.94■■□□□ 1.42
VPS53-216ENST00000574029 MAFBQ9Y5Q3 323 aaPredicted RBP23.94■■□□□ 1.42
VPS53-216ENST00000574029 MYH9P35579 1960 aaKnown RBP23.93■■□□□ 1.42
VPS53-216ENST00000574029 CCDC196A0A1B0GTZ2 297 aa23.93■■□□□ 1.42
VPS53-216ENST00000574029 ADAMTS3O15072 1205 aa23.93■■□□□ 1.42
VPS53-216ENST00000574029 METAP2P50579 478 aaKnown RBP eCLIP23.93■■□□□ 1.42
VPS53-216ENST00000574029 CSPP1Q1MSJ5 1256 aa23.93■■□□□ 1.42
VPS53-216ENST00000574029 EFHBQ8N7U6 833 aa23.93■■□□□ 1.42
VPS53-216ENST00000574029 BBXQ8WY36 941 aaPredicted RBP23.93■■□□□ 1.42
VPS53-216ENST00000574029 ZNF577Q9BSK1 485 aa23.93■■□□□ 1.42
VPS53-216ENST00000574029 RNF216Q9NWF9 866 aaPredicted RBP23.93■■□□□ 1.42
VPS53-216ENST00000574029 GPR182O15218 404 aa23.92■■□□□ 1.42
VPS53-216ENST00000574029 CDC45O75419 566 aa23.92■■□□□ 1.42
VPS53-216ENST00000574029 C22orf31O95567 290 aa23.92■■□□□ 1.42
VPS53-216ENST00000574029 NDUFV1P49821 464 aa23.92■■□□□ 1.42
VPS53-216ENST00000574029 SETQ01105 290 aaPredicted RBP23.92■■□□□ 1.42
VPS53-216ENST00000574029 PKN1Q16512 942 aa23.92■■□□□ 1.42
VPS53-216ENST00000574029 ZNF746Q6NUN9 644 aaPredicted RBP23.92■■□□□ 1.42
VPS53-216ENST00000574029 SLC24A5Q71RS6 500 aa23.92■■□□□ 1.42
VPS53-216ENST00000574029 CENPQQ7L2Z9 268 aaPredicted RBP23.92■■□□□ 1.42
VPS53-216ENST00000574029 KCNB2Q92953 911 aa23.92■■□□□ 1.42
VPS53-216ENST00000574029 ADAM2Q99965 735 aa23.92■■□□□ 1.42
VPS53-216ENST00000574029 CLEC1BQ9P126 229 aa23.92■■□□□ 1.42
VPS53-216ENST00000574029 NAP1L2Q9ULW6 460 aaPredicted RBP23.92■■□□□ 1.42
VPS53-216ENST00000574029 ST3GAL5Q9UNP4 418 aa23.92■■□□□ 1.42
VPS53-216ENST00000574029 NID2Q14112 1375 aa23.91■■□□□ 1.42
VPS53-216ENST00000574029 WDR81Q562E7 1941 aa23.91■■□□□ 1.42
VPS53-216ENST00000574029 DENND3A2RUS2 1198 aa23.91■■□□□ 1.42
VPS53-216ENST00000574029 C9IYK1 514 aa23.91■■□□□ 1.42
VPS53-216ENST00000574029 EYA4O95677 639 aa23.91■■□□□ 1.42
VPS53-216ENST00000574029 CRYBB1P53674 252 aaPredicted RBP23.91■■□□□ 1.42
VPS53-216ENST00000574029 APOBRQ0VD83 1088 aa23.91■■□□□ 1.42
VPS53-216ENST00000574029 SMAP1Q8IYB5 467 aaPredicted RBP23.91■■□□□ 1.42
VPS53-216ENST00000574029 CCDC12Q8WUD4 166 aaPredicted RBP23.91■■□□□ 1.42
VPS53-216ENST00000574029 UIMC1Q96RL1 719 aa23.91■■□□□ 1.42
VPS53-216ENST00000574029 C6orf50Q9HD87 102 aa23.91■■□□□ 1.42
VPS53-216ENST00000574029 PRPF3O43395 683 aaKnown RBP23.9■■□□□ 1.42
VPS53-216ENST00000574029 CPA1P15085 419 aa23.9■■□□□ 1.42
VPS53-216ENST00000574029 FGD1P98174 961 aa23.9■■□□□ 1.42
VPS53-216ENST00000574029 UBE3AQ05086 875 aa23.9■■□□□ 1.42
VPS53-216ENST00000574029 FAM228AQ86W67 206 aa23.9■■□□□ 1.42
VPS53-216ENST00000574029 CKAP2LQ8IYA6 745 aa23.9■■□□□ 1.42
VPS53-216ENST00000574029 REXO1Q8N1G1 1221 aaKnown RBP23.9■■□□□ 1.42
VPS53-216ENST00000574029 PCDHB12Q9Y5F1 795 aa23.9■■□□□ 1.42
VPS53-216ENST00000574029 TBKBP1A7MCY6 615 aa23.89■■□□□ 1.41
VPS53-216ENST00000574029 GPR32O75388 356 aa23.89■■□□□ 1.41
VPS53-216ENST00000574029 PSAPP07602 524 aa23.89■■□□□ 1.41
VPS53-216ENST00000574029 IBSPP21815 317 aaPredicted RBP23.89■■□□□ 1.41
VPS53-216ENST00000574029 CIITAP33076 1130 aa23.89■■□□□ 1.41
VPS53-216ENST00000574029 NRIP1P48552 1158 aa23.89■■□□□ 1.41
VPS53-216ENST00000574029 FAM189BP81408 668 aa23.89■■□□□ 1.41
VPS53-216ENST00000574029 COASYQ13057 564 aa23.89■■□□□ 1.41
VPS53-216ENST00000574029 KIZQ2M2Z5 673 aa23.89■■□□□ 1.41
VPS53-216ENST00000574029 HERC4Q5GLZ8 1057 aaPredicted RBP23.89■■□□□ 1.41
VPS53-216ENST00000574029 FAM102BQ5T8I3 360 aa23.89■■□□□ 1.41
VPS53-216ENST00000574029 Q6ZUG5 572 aa23.89■■□□□ 1.41
VPS53-216ENST00000574029 OSMRQ99650 979 aa23.89■■□□□ 1.41
VPS53-216ENST00000574029 AAASQ9NRG9 546 aa23.89■■□□□ 1.41
VPS53-216ENST00000574029 PCDHGC5Q9Y5F6 944 aa23.89■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms