RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 SPPL3Q8TCT6 385 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 ATP8B4Q8TF62 1192 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 LENG9Q96B70 501 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 SDF4Q9BRK5 362 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 ZMYND12Q9H0C1 365 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 LMAN2LQ9H0V9 348 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 ALG13Q9NP73 1137 aaKnown RBP7.66□□□□□ -1.18
VPS53-213ENST00000572334 CLDND1Q9NY35 253 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 HCSTQ9UBK5 93 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 PLAGL2Q9UPG8 496 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 TRPC6Q9Y210 931 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 NOC2LQ9Y3T9 749 aaKnown RBP7.66□□□□□ -1.18
VPS53-213ENST00000572334 DMDP11532 3685 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 ESYT2A0FGR8 921 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 DDX39AO00148 427 aaKnown RBP7.65□□□□□ -1.18
VPS53-213ENST00000572334 MBTPS2O43462 519 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 HBP1O60381 514 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 GPR32O75388 356 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 C22orf31O95567 290 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 GLP2RO95838 553 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 RPLP2P05387 115 aaKnown RBP7.65□□□□□ -1.18
VPS53-213ENST00000572334 COL1A2P08123 1366 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 SCG2P13521 617 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 SLC26A2P50443 739 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 ADAM15Q13444 863 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 DSC3Q14574 896 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 SMAD2Q15796 467 aaKnown RBP7.65□□□□□ -1.18
VPS53-213ENST00000572334 PAN2Q504Q3 1202 aaKnown RBP7.65□□□□□ -1.18
VPS53-213ENST00000572334 RNF20Q5VTR2 975 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 IER5Q5VY09 327 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 SYNE3Q6ZMZ3 975 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 Q6ZUG5 572 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 CENPQQ7L2Z9 268 aaPredicted RBP7.65□□□□□ -1.18
VPS53-213ENST00000572334 PLA2G4DQ86XP0 818 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 NPAS4Q8IUM7 802 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 KMT2EQ8IZD2 1858 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 NME8Q8N427 588 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 FBXL16Q8N461 479 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 KLHL23Q8NBE8 558 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 RASGRP4Q8TDF6 673 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 P2RX5Q93086 422 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 MSLNLQ96KJ4 702 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 C11orf84Q9BUA3 381 aaPredicted RBP7.65□□□□□ -1.18
VPS53-213ENST00000572334 PLVAPQ9BX97 442 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 FTHL17Q9BXU8 183 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 AZI2Q9H6S1 392 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 RNF19AQ9NV58 838 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 CLEC1BQ9P126 229 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 RWDD3Q9Y3V2 267 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 ARIH1Q9Y4X5 557 aaPredicted RBP7.65□□□□□ -1.18
VPS53-213ENST00000572334 PCDHGC5Q9Y5F6 944 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 MAFBQ9Y5Q3 323 aaPredicted RBP7.65□□□□□ -1.18
VPS53-213ENST00000572334 SNX14Q9Y5W7 946 aa7.65□□□□□ -1.18
VPS53-213ENST00000572334 CACNA1HO95180 2353 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 C9IYK1 514 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 IPO5O00410 1097 aaKnown RBP7.64□□□□□ -1.19
VPS53-213ENST00000572334 PRPF3O43395 683 aaKnown RBP7.64□□□□□ -1.19
VPS53-213ENST00000572334 ZNF862O60290 1169 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 PPFIA3O75145 1194 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 CDC45O75419 566 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 CSPG5O95196 566 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 EYA4O95677 639 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 CIITAP33076 1130 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 HSPA4P34932 840 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 SARSP49591 514 aaKnown RBP7.64□□□□□ -1.19
VPS53-213ENST00000572334 FAM189BP81408 668 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 KRT76Q01546 638 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 PAK2Q13177 524 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 CLUL1Q15846 466 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 PUS10Q3MIT2 529 aaKnown RBP7.64□□□□□ -1.19
VPS53-213ENST00000572334 ZNF484Q5JVG2 852 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 FAM102BQ5T8I3 360 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 SWSAP1Q6NVH7 229 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 PDXDC2PQ6P474 469 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 FAM228AQ86W67 206 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 ADHFE1Q8IWW8 467 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 VN1R2Q8NFZ6 395 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 BRF1Q92994 677 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 PHKBQ93100 1093 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 ZNF302Q9NR11 478 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 RGS18Q9NS28 235 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 PRKAG3Q9UGI9 489 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 ST3GAL5Q9UNP4 418 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 ARID2Q68CP9 1835 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 MYO15AQ9UKN7 3530 aa7.64□□□□□ -1.19
VPS53-213ENST00000572334 USP34Q70CQ2 3546 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 PRR33A8MZF0 331 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 NCK2O43639 380 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 RPS6KA5O75582 802 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 STBD1O95210 358 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 RPS6KB1P23443 525 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 ZNF76P36508 570 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 METAP2P50579 478 aaKnown RBP eCLIP7.63□□□□□ -1.19
VPS53-213ENST00000572334 FXR2P51116 673 aaKnown RBP eCLIP7.63□□□□□ -1.19
VPS53-213ENST00000572334 EVCP57679 992 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 RBM10P98175 930 aaKnown RBP7.63□□□□□ -1.19
VPS53-213ENST00000572334 NFX1Q12986 1120 aaKnown RBP7.63□□□□□ -1.19
VPS53-213ENST00000572334 KCNC3Q14003 757 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 KRT32Q14532 448 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 NPY5RQ15761 445 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms