RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 FAM178BQ8IXR5 827 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 LRRC34Q8IZ02 419 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 PROM2Q8N271 834 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 PRPF38AQ8NAV1 312 aaKnown RBP12.34□□□□□ -0.43
CLN3-238ENST00000569430 BHMT2Q9H2M3 363 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 CHORDC1Q9UHD1 332 aaPredicted RBP12.34□□□□□ -0.43
CLN3-238ENST00000569430 ZNF263O14978 683 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 CAND2O75155 1236 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 TCP10Q12799 353 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 NAIF1Q69YI7 327 aaPredicted RBP12.34□□□□□ -0.43
CLN3-238ENST00000569430 FUKQ8N0W3 1084 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 VCXQ9H320 206 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.34□□□□□ -0.43
CLN3-238ENST00000569430 ZNF804BA4D1E1 1349 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 POTEFA5A3E0 1075 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 USP17L15C9J2P7 530 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 USP17L13C9JLJ4 530 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 USP17L11C9JVI0 530 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 USP17L18D6R9N7 530 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 USP17L22D6RA61 530 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 USP17L17D6RBQ6 530 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 USP17L19D6RCP7 530 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 USP17L20D6RJB6 530 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 OPLAHO14841 1288 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 FSBPO95073 299 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 CFBP00751 764 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 POTEIP0CG38 1075 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 RFC4P35249 363 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 STAT3P40763 770 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 USP17L24Q0WX57 530 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 BYSLQ13895 437 aaKnown RBP12.34□□□□□ -0.43
CLN3-238ENST00000569430 SLC29A2Q14542 456 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 TMED2Q15363 201 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 MFSD14BQ5SR56 506 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 ANKRD20A3Q5VUR7 823 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 USP17L6PQ6QN14 398 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 POTEGQ6S5H5 508 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 POTEEQ6S8J3 1075 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 TRPM8Q7Z2W7 1104 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 SFR1Q86XK3 245 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 KIAA0895Q8NCT3 520 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 CELF1Q92879 486 aaKnown RBP12.34□□□□□ -0.43
CLN3-238ENST00000569430 CARD10Q9BWT7 1032 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 PITPNM3Q9BZ71 974 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 PCIF1Q9H4Z3 704 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 FGFR1OP2Q9NVK5 253 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 SLAIN2Q9P270 581 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 INTUQ9ULD6 942 aa12.34□□□□□ -0.43
CLN3-238ENST00000569430 ARHGEF35A5YM69 484 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 ERFP50548 548 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 GALCP54803 685 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 SGO2Q562F6 1265 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 LRIG3Q6UXM1 1119 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 SCYL3Q8IZE3 742 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 STAMBPL1Q96FJ0 436 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 FAM84BQ96KN1 310 aaPredicted RBP12.33□□□□□ -0.44
CLN3-238ENST00000569430 EDEM3Q9BZQ6 932 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 DNAJC12Q9UKB3 198 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 LEMD3Q9Y2U8 911 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 SPATA31A3Q5VYP0 1347 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 ECEL1O95672 775 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 BRAFP15056 766 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 UCHL3P15374 230 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 CDK8P49336 464 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 GRM4Q14833 912 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 SMC6Q96SB8 1091 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 SLITRK6Q9H5Y7 841 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 MINPP1Q9UNW1 487 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 RGPD5Q99666 1765 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 LUC7L3O95232 432 aaKnown RBP12.33□□□□□ -0.44
CLN3-238ENST00000569430 RASSF2P50749 326 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 USP11P51784 963 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 HP1BP3Q5SSJ5 553 aaPredicted RBP12.33□□□□□ -0.44
CLN3-238ENST00000569430 GJB7Q6PEY0 223 aa12.33□□□□□ -0.44
CLN3-238ENST00000569430 UBE2TQ9NPD8 197 aaPredicted RBP12.33□□□□□ -0.44
CLN3-238ENST00000569430 ERVV-1B6SEH8 477 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 ORC4O43929 436 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 ANP32DO95626 131 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 BAG2O95816 211 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 MYBL1P10243 752 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 CYP19A1P11511 503 aaPredicted RBP12.32□□□□□ -0.44
CLN3-238ENST00000569430 ATF2P15336 505 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 KCNJ1P48048 391 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 ODR4Q5SWX8 454 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 RASIP1Q5U651 963 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 LRRC8CQ8TDW0 803 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 PIGOQ8TEQ8 1089 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 SH3GL2Q99962 352 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 UBXN2AP68543 259 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 IL9RQ01113 521 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 EVX2Q03828 476 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 ZNF844Q08AG5 666 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 SLMAPQ14BN4 828 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 LONRF1Q17RB8 773 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 NAALADL2Q58DX5 795 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 ANKRD20A8PQ5CZ79 823 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 FIGNQ5HY92 759 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 KAZNQ674X7 775 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 CENPPQ6IPU0 288 aa12.32□□□□□ -0.44
CLN3-238ENST00000569430 AEBP2Q6ZN18 517 aaPredicted RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms