RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 USP54Q70EL1 1684 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 PRUNE2Q8WUY3 3088 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 CCDC18Q5T9S5 1454 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 BCL9O00512 1426 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 EEA1Q15075 1411 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 ERBINQ96RT1 1412 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 ITIH6Q6UXX5 1313 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 TRIM75PA6NK02 468 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 RASA4BC9J798 803 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 MASP2O00187 686 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 GFRA2O00451 464 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 RASA4O43374 803 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 FRS3O43559 492 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 ARIH2O95376 493 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 U2AF1L5P0DN76 240 aaPredicted RBP3.54□□□□□ -1.84
VPS35-209ENST00000568642 MYBP10242 640 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 MYBL2P10244 700 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 FGFR1P11362 822 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 CPEP16870 476 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 MMP14P50281 582 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 TUBP50607 506 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 PPP2R2AP63151 447 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 U2AF1Q01081 240 aaKnown RBP eCLIP3.54□□□□□ -1.84
VPS35-209ENST00000568642 TNP2Q05952 138 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 CYP4F3Q08477 520 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 ADCY1Q08828 1119 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 SFSWAPQ12872 951 aaKnown RBP3.54□□□□□ -1.84
VPS35-209ENST00000568642 G3BP1Q13283 466 aaKnown RBP eCLIP3.54□□□□□ -1.845e-7■■■■□ 21.7
VPS35-209ENST00000568642 ACAP1Q15027 740 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 FBLN7Q53RD9 439 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 SLC45A4Q5BKX6 768 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 DNAJC21Q5F1R6 531 aaKnown RBP3.54□□□□□ -1.84
VPS35-209ENST00000568642 RRP12Q5JTH9 1297 aaKnown RBP3.54□□□□□ -1.84
VPS35-209ENST00000568642 VPS53Q5VIR6 699 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 INTS3Q68E01 1043 aaKnown RBP3.54□□□□□ -1.84
VPS35-209ENST00000568642 SWSAP1Q6NVH7 229 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 VHLLQ6RSH7 139 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 Q7L0L9 218 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 RSRC2Q7L4I2 434 aaKnown RBP3.54□□□□□ -1.84
VPS35-209ENST00000568642 CYP2U1Q7Z449 544 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 SNX32Q86XE0 403 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 COL23A1Q86Y22 540 aaPredicted RBP3.54□□□□□ -1.84
VPS35-209ENST00000568642 TMTC1Q8IUR5 882 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 NDUFAF2Q8N183 169 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 CHCHD4Q8N4Q1 142 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 GRIN3AQ8TCU5 1115 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 TMEM40Q8WWA1 233 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 RPGRQ92834 1020 aaKnown RBP3.54□□□□□ -1.84
VPS35-209ENST00000568642 HSPBAP1Q96EW2 488 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 HSH2DQ96JZ2 352 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 TTC1Q99614 292 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 BHMT2Q9H2M3 363 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 C1orf112Q9NSG2 853 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 CRYL1Q9Y2S2 319 aa3.54□□□□□ -1.84
VPS35-209ENST00000568642 FAM208BQ5VWN6 2430 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 ALS2Q96Q42 1657 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 LRRC10BA6NIK2 292 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 B4E171 279 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 GOLIM4O00461 696 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 TNFRSF10CO14798 259 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 ATXN7O15265 892 aaPredicted RBP3.53□□□□□ -1.84
VPS35-209ENST00000568642 AOC2O75106 756 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 TRPA1O75762 1119 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 MBD4O95243 580 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 TBC1D8O95759 1140 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 CPP00450 1065 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 SOD2P04179 222 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 ASLP04424 464 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 JMJD7P0C870 316 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 PABPC1P11940 636 aaKnown RBP3.53□□□□□ -1.84
VPS35-209ENST00000568642 XPAP23025 273 aaPredicted RBP3.53□□□□□ -1.84
VPS35-209ENST00000568642 PLA2G4AP47712 749 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 MAN2A2P49641 1150 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 PRKG2Q13237 762 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 KLF1Q13351 362 aaPredicted RBP3.53□□□□□ -1.84
VPS35-209ENST00000568642 DGKKQ5KSL6 1271 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 SPATA1Q5VX52 437 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 KIAA1211LQ6NV74 962 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 FIGNL1Q6PIW4 674 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 CASC1Q6TDU7 716 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 ADAMTSL4Q6UY14 1074 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 PPFIBP1Q86W92 1011 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 C7orf61Q8IZ16 206 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 TRMT2AQ8IZ69 625 aaKnown RBP3.53□□□□□ -1.84
VPS35-209ENST00000568642 KIAA0319LQ8IZA0 1049 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 NXPE1Q8N323 547 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 MICALL1Q8N3F8 863 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 CLRN3Q8NCR9 226 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 FAM156AQ8NDB6 213 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 SIMC1Q8NDZ2 872 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 OR10H5Q8NGA6 315 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 PPP1R35Q8TAP8 253 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 SNX21Q969T3 373 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 ATG4CQ96DT6 458 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 ZBTB10Q96DT7 871 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 HHIPQ96QV1 700 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 ZSCAN10Q96SZ4 725 aaPredicted RBP3.53□□□□□ -1.84
VPS35-209ENST00000568642 MYCBPQ99417 103 aaPredicted RBP3.53□□□□□ -1.84
VPS35-209ENST00000568642 TBCBQ99426 244 aa3.53□□□□□ -1.84
VPS35-209ENST00000568642 ACO2Q99798 780 aaKnown RBP3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms