RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 GNRHR2Q96P88 292 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 BOCQ9BWV1 1114 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 KRTAP3-1Q9BYR8 98 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 OSBPL2Q9H1P3 480 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 MEGF9Q9H1U4 602 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 VPS11Q9H270 941 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 NELFAQ9H3P2 528 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 CABP5Q9NP86 173 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 FAM184BQ9ULE4 1060 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 OAZ3Q9UMX2 235 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 TCRBV16S1A1N1A0A5B0 115 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 PLD2O14939 933 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 RAD17O75943 681 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 RASGRP1O95267 797 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 MMEP08473 750 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 C6P13671 934 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 TACR2P21452 398 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 APEX1P27695 318 aaKnown RBP4.34□□□□□ -1.71
VPS35-207ENST00000568191 RANGAP1P46060 587 aaPredicted RBP4.34□□□□□ -1.71
VPS35-207ENST00000568191 TMEM177Q53S58 311 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 KRTAP5-3Q6L8H2 238 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 UBE2R2Q712K3 238 aaPredicted RBP4.34□□□□□ -1.71
VPS35-207ENST00000568191 BRAPQ7Z569 592 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 SPRED1Q7Z699 444 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 JMYQ8N9B5 988 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 IGSF22Q8N9C0 903 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 SLC7A14Q8TBB6 771 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 SREK1Q8WXA9 508 aaKnown RBP4.34□□□□□ -1.71
VPS35-207ENST00000568191 ASB15Q8WXK1 588 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 LPPQ93052 612 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 ADOQ96SZ5 270 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 ZNF341Q9BYN7 854 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 OR10A2Q9H208 303 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 BTBD7Q9P203 1132 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 CDC42EP3Q9UKI2 254 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 B3GALT1Q9Y5Z6 326 aa4.34□□□□□ -1.71
VPS35-207ENST00000568191 GOLGA6L22H0YM25 854 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 FOXS1O43638 330 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 H2AFYO75367 372 aaKnown RBP4.33□□□□□ -1.72
VPS35-207ENST00000568191 SDHAP31040 664 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 IGFALSP35858 605 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 IRF9Q00978 393 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 CD83Q01151 205 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 MOGSQ13724 837 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 NFYCQ13952 458 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 ZNF174Q15697 407 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 RNF151Q2KHN1 245 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 FNDC3BQ53EP0 1204 aaKnown RBP4.33□□□□□ -1.72
VPS35-207ENST00000568191 AGBL4Q5VU57 503 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 CC2D1AQ6P1N0 951 aaPredicted RBP4.33□□□□□ -1.72
VPS35-207ENST00000568191 OVCH1Q7RTY7 1134 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 FILIP1Q7Z7B0 1213 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 NME9Q86XW9 330 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 NOSTRINQ8IVI9 506 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 DLG3Q92796 817 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 EDAQ92838 391 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 ERCC4Q92889 916 aaPredicted RBP4.33□□□□□ -1.72
VPS35-207ENST00000568191 OR14A2Q96R54 314 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 PCIF1Q9H4Z3 704 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 NCOA5Q9HCD5 579 aaKnown RBP4.33□□□□□ -1.72
VPS35-207ENST00000568191 ACSS2Q9NR19 701 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 PTPN22Q9Y2R2 807 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 VWA7Q9Y334 891 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 PTCH2Q9Y6C5 1203 aa4.33□□□□□ -1.72
VPS35-207ENST00000568191 H7C1D1 291 aa4.32□□□□□ -1.72
VPS35-207ENST00000568191 CYR61O00622 381 aa4.32□□□□□ -1.72
VPS35-207ENST00000568191 OPA1O60313 960 aa4.32□□□□□ -1.72
VPS35-207ENST00000568191 AMHP03971 560 aa4.32□□□□□ -1.72
VPS35-207ENST00000568191 ASLP04424 464 aa4.32□□□□□ -1.72
VPS35-207ENST00000568191 CYP17A1P05093 508 aa4.32□□□□□ -1.72
VPS35-207ENST00000568191 MC4RP32245 332 aa4.32□□□□□ -1.72
VPS35-207ENST00000568191 MRE11P49959 708 aa4.32□□□□□ -1.72
VPS35-207ENST00000568191 ROM1Q03395 351 aa4.32□□□□□ -1.72
VPS35-207ENST00000568191 PCOLCEQ15113 449 aa4.32□□□□□ -1.72
VPS35-207ENST00000568191 NRN1LQ496H8 165 aa4.32□□□□□ -1.72
VPS35-207ENST00000568191 GFM2Q969S9 779 aaKnown RBP4.32□□□□□ -1.72
VPS35-207ENST00000568191 SCLYQ96I15 445 aa4.32□□□□□ -1.72
VPS35-207ENST00000568191 DNAJC2Q99543 621 aaKnown RBP4.32□□□□□ -1.72
VPS35-207ENST00000568191 AMNQ9BXJ7 453 aa4.32□□□□□ -1.72
VPS35-207ENST00000568191 AURKAIP1Q9NWT8 199 aaPredicted RBP4.32□□□□□ -1.72
VPS35-207ENST00000568191 SAMD15Q9P1V8 674 aa4.32□□□□□ -1.72
VPS35-207ENST00000568191 SAE1Q9UBE0 346 aaPredicted RBP4.32□□□□□ -1.72
VPS35-207ENST00000568191 SYNPO2Q9UMS6 1093 aa4.32□□□□□ -1.72
VPS35-207ENST00000568191 CDK11AQ9UQ88 783 aaPredicted RBP4.32□□□□□ -1.72
VPS35-207ENST00000568191 SLC30A1Q9Y6M5 507 aa4.32□□□□□ -1.72
VPS35-207ENST00000568191 CYP27B1O15528 508 aa4.31□□□□□ -1.72
VPS35-207ENST00000568191 MAFO75444 373 aaPredicted RBP4.31□□□□□ -1.72
VPS35-207ENST00000568191 KRT37O76014 449 aa4.31□□□□□ -1.72
VPS35-207ENST00000568191 ACO1P21399 889 aaKnown RBP4.31□□□□□ -1.72
VPS35-207ENST00000568191 FNTBP49356 437 aa4.31□□□□□ -1.72
VPS35-207ENST00000568191 BMS1Q14692 1282 aaKnown RBP4.31□□□□□ -1.72
VPS35-207ENST00000568191 CDSNQ15517 529 aa4.31□□□□□ -1.72
VPS35-207ENST00000568191 SPDYAQ5MJ70 313 aa4.31□□□□□ -1.72
VPS35-207ENST00000568191 KANK2Q63ZY3 851 aa4.31□□□□□ -1.72
VPS35-207ENST00000568191 TMEM200BQ69YZ2 307 aa4.31□□□□□ -1.72
VPS35-207ENST00000568191 TRIM68Q6AZZ1 485 aa4.31□□□□□ -1.72
VPS35-207ENST00000568191 ZCCHC8Q6NZY4 707 aaKnown RBP4.31□□□□□ -1.72
VPS35-207ENST00000568191 KLHDC10Q6PID8 442 aa4.31□□□□□ -1.72
VPS35-207ENST00000568191 LRSAM1Q6UWE0 723 aa4.31□□□□□ -1.72
VPS35-207ENST00000568191 ADGRE4PQ86SQ3 457 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms