RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 GPR62Q9BZJ7 368 aa7.01□□□□□ -1.29
VPS39-209ENST00000568029 FZD1Q9UP38 647 aa7.01□□□□□ -1.29
VPS39-209ENST00000568029 TRIM17Q9Y577 477 aa7.01□□□□□ -1.29
VPS39-209ENST00000568029 CDHR2Q9BYE9 1310 aa7.01□□□□□ -1.29
VPS39-209ENST00000568029 ANKRD36CQ5JPF3 1778 aa7□□□□□ -1.29
VPS39-209ENST00000568029 PRUNE2Q8WUY3 3088 aa7□□□□□ -1.29
VPS39-209ENST00000568029 UBE2Q2LH0YL09 131 aa7□□□□□ -1.29
VPS39-209ENST00000568029 EPHX1P07099 455 aa7□□□□□ -1.29
VPS39-209ENST00000568029 SRFP11831 508 aa7□□□□□ -1.29
VPS39-209ENST00000568029 FOSL1P15407 271 aa7□□□□□ -1.29
VPS39-209ENST00000568029 CLCN7P51798 805 aa7□□□□□ -1.29
VPS39-209ENST00000568029 SLC10A6Q3KNW5 377 aa7□□□□□ -1.29
VPS39-209ENST00000568029 TDRD10Q5VZ19 366 aaKnown RBP7□□□□□ -1.29
VPS39-209ENST00000568029 TSHZ3Q63HK5 1081 aa7□□□□□ -1.29
VPS39-209ENST00000568029 AACSQ86V21 672 aa7□□□□□ -1.29
VPS39-209ENST00000568029 ZNF513Q8N8E2 541 aaPredicted RBP7□□□□□ -1.29
VPS39-209ENST00000568029 EVI5LQ96CN4 794 aa7□□□□□ -1.29
VPS39-209ENST00000568029 RCC1LQ96I51 464 aaKnown RBP7□□□□□ -1.29
VPS39-209ENST00000568029 ZNF512BQ96KM6 892 aaPredicted RBP7□□□□□ -1.29
VPS39-209ENST00000568029 APBA2Q99767 749 aa7□□□□□ -1.29
VPS39-209ENST00000568029 DBNDD1Q9H9R9 158 aa7□□□□□ -1.29
VPS39-209ENST00000568029 GP6Q9HCN6 339 aa7□□□□□ -1.29
VPS39-209ENST00000568029 DIAPH3Q9NSV4 1193 aa7□□□□□ -1.29
VPS39-209ENST00000568029 CWC25Q9NXE8 425 aaPredicted RBP7□□□□□ -1.29
VPS39-209ENST00000568029 PA2G4Q9UQ80 394 aaKnown RBP7□□□□□ -1.29
VPS39-209ENST00000568029 LEMD3Q9Y2U8 911 aa7□□□□□ -1.29
VPS39-209ENST00000568029 SNX11Q9Y5W9 270 aa7□□□□□ -1.29
VPS39-209ENST00000568029 FHOD1Q9Y613 1164 aa7□□□□□ -1.29
VPS39-209ENST00000568029 MUC3AQ02505 3323 aa7□□□□□ -1.29
VPS39-209ENST00000568029 PRR19A6NJB7 356 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 GOLGA6L22H0YM25 854 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 SIGLEC6O43699 453 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 FKTNO75072 461 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 PPM1BO75688 479 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 NTSR2O95665 410 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 TP53P04637 393 aaPredicted RBP6.99□□□□□ -1.29
VPS39-209ENST00000568029 ITGA4P13612 1032 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 DDIT3P35638 169 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 NUCB2P80303 420 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 TNK2Q07912 1038 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 KIAA2012Q0VF49 1180 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 LONRF2Q1L5Z9 754 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 SKOR2Q2VWA4 1001 aaPredicted RBP6.99□□□□□ -1.29
VPS39-209ENST00000568029 ANGEL2Q5VTE6 544 aaKnown RBP6.99□□□□□ -1.29
VPS39-209ENST00000568029 SUSD4Q5VX71 490 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 DCAF15Q66K64 600 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 CLEC4GQ6UXB4 293 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 TTLL7Q6ZT98 887 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 UBE3BQ7Z3V4 1068 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 THAP5Q7Z6K1 395 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 CCDC191Q8NCU4 936 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 SYTL5Q8TDW5 730 aaPredicted RBP6.99□□□□□ -1.29
VPS39-209ENST00000568029 KAZALD1Q96I82 304 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 RTFDC1Q9BY42 306 aaPredicted RBP6.99□□□□□ -1.29
VPS39-209ENST00000568029 PRDM14Q9GZV8 571 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 PRO3102Q9H379 93 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 ZNF652Q9Y2D9 606 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 ATP6V0A2Q9Y487 856 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 ZNF451Q9Y4E5 1061 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 PSME4Q14997 1843 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 PITPNM2Q9BZ72 1349 aa6.99□□□□□ -1.29
VPS39-209ENST00000568029 H7C1D1 291 aa6.98□□□□□ -1.29
VPS39-209ENST00000568029 AGRPO00253 132 aa6.98□□□□□ -1.29
VPS39-209ENST00000568029 SGSM2O43147 1006 aa6.98□□□□□ -1.29
VPS39-209ENST00000568029 LRRN2O75325 713 aa6.98□□□□□ -1.29
VPS39-209ENST00000568029 SASH1O94885 1247 aa6.98□□□□□ -1.29
VPS39-209ENST00000568029 MAP4K4O95819 1239 aaPredicted RBP6.98□□□□□ -1.29
VPS39-209ENST00000568029 CBX7O95931 251 aa6.98□□□□□ -1.29
VPS39-209ENST00000568029 CEACAM5P06731 702 aa6.98□□□□□ -1.29
VPS39-209ENST00000568029 NEK4P51957 841 aa6.98□□□□□ -1.29
VPS39-209ENST00000568029 NKPD1Q17RQ9 610 aa6.98□□□□□ -1.29
VPS39-209ENST00000568029 RABL6Q3YEC7 729 aaPredicted RBP6.98□□□□□ -1.29
VPS39-209ENST00000568029 MTERF2Q49AM1 385 aa6.98□□□□□ -1.29
VPS39-209ENST00000568029 DPP8Q6V1X1 898 aaPredicted RBP6.98□□□□□ -1.29
VPS39-209ENST00000568029 KIF6Q6ZMV9 814 aa6.98□□□□□ -1.29
VPS39-209ENST00000568029 Q7L0L9 218 aa6.98□□□□□ -1.29
VPS39-209ENST00000568029 SPACA3Q8IXA5 215 aa6.98□□□□□ -1.29
VPS39-209ENST00000568029 LRRC47Q8N1G4 583 aaKnown RBP6.98□□□□□ -1.29
VPS39-209ENST00000568029 CRACR2BQ8N4Y2 399 aaPredicted RBP6.98□□□□□ -1.29
VPS39-209ENST00000568029 CD99L2Q8TCZ2 262 aa6.98□□□□□ -1.29
VPS39-209ENST00000568029 DCPSQ96C86 337 aaKnown RBP6.98□□□□□ -1.29
VPS39-209ENST00000568029 IL17RAQ96F46 866 aa6.98□□□□□ -1.29
VPS39-209ENST00000568029 CRAMP1Q96RY5 1269 aa6.98□□□□□ -1.29
VPS39-209ENST00000568029 ASCC2Q9H1I8 757 aaPredicted RBP6.98□□□□□ -1.29
VPS39-209ENST00000568029 TRIT1Q9H3H1 467 aaKnown RBP6.98□□□□□ -1.29
VPS39-209ENST00000568029 RAPGEFL1Q9UHV5 662 aa6.98□□□□□ -1.29
VPS39-209ENST00000568029 ZMYM5Q9UJ78 669 aa6.98□□□□□ -1.29
VPS39-209ENST00000568029 DIS3Q9Y2L1 958 aaKnown RBP6.98□□□□□ -1.29
VPS39-209ENST00000568029 TMA7Q9Y2S6 64 aaKnown RBP6.98□□□□□ -1.29
VPS39-209ENST00000568029 ST14Q9Y5Y6 855 aa6.98□□□□□ -1.29
VPS39-209ENST00000568029 KIAA0100Q14667 2235 aaKnown RBP6.98□□□□□ -1.29
VPS39-209ENST00000568029 OTOFQ9HC10 1997 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 TLDC2A0PJX2 215 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 WTIPA6NIX2 430 aaPredicted RBP6.97□□□□□ -1.29
VPS39-209ENST00000568029 PRR33A8MZF0 331 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 CYP26A1O43174 497 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 ATP5JP18859 108 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 HSPA4P34932 840 aa6.97□□□□□ -1.29
VPS39-209ENST00000568029 NMIQ13287 307 aaPredicted RBP6.97□□□□□ -1.29
VPS39-209ENST00000568029 TCIRG1Q13488 830 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms