RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ATF7P17544 494 aaPredicted RBP10.09□□□□□ -0.79
VPS39-205ENST00000562258 GCLMP48507 274 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 MXI1P50539 228 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 TEX35Q5T0J7 233 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 TATDN1Q6P1N9 297 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 PHLDB2Q86SQ0 1253 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 ARRDC4Q8NCT1 418 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 BAG1Q99933 345 aaPredicted RBP10.09□□□□□ -0.79
VPS39-205ENST00000562258 CTTNBP2NLQ9P2B4 639 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 MYO6Q9UM54 1294 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 GON4LQ3T8J9 2241 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 PITPNM2Q9BZ72 1349 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 TBC1D12O60347 775 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 FKTNO75072 461 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 SMARCA1P28370 1054 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 ACOT2P49753 483 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 SNW1Q13573 536 aaKnown RBP10.08□□□□□ -0.8
VPS39-205ENST00000562258 HLTFQ14527 1009 aaKnown RBP eCLIP10.08□□□□□ -0.8
VPS39-205ENST00000562258 LLGL1Q15334 1064 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 EARS2Q5JPH6 523 aaKnown RBP10.08□□□□□ -0.8
VPS39-205ENST00000562258 CCDC122Q5T0U0 273 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 RESP18Q5W5W9 173 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 RSRC2Q7L4I2 434 aaKnown RBP10.08□□□□□ -0.8
VPS39-205ENST00000562258 CCDC117Q8IWD4 279 aaPredicted RBP10.08□□□□□ -0.8
VPS39-205ENST00000562258 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.08□□□□□ -0.8
VPS39-205ENST00000562258 SENP6Q9GZR1 1112 aaPredicted RBP10.08□□□□□ -0.8
VPS39-205ENST00000562258 FAM217BQ9NTX9 383 aaPredicted RBP10.08□□□□□ -0.8
VPS39-205ENST00000562258 PRRC2BQ5JSZ5 2229 aaKnown RBP10.08□□□□□ -0.8
VPS39-205ENST00000562258 RPS6KA5O75582 802 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 CPT1AP50416 773 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 SOX10P56693 466 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 MAP2K1Q02750 393 aaPredicted RBP10.08□□□□□ -0.8
VPS39-205ENST00000562258 ZNF658Q5TYW1 1059 aaPredicted RBP10.08□□□□□ -0.8
VPS39-205ENST00000562258 SCYL2Q6P3W7 929 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 DEFB118Q96PH6 123 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 MAGEF1Q9HAY2 307 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 TOPORSQ9NS56 1045 aaPredicted RBP10.08□□□□□ -0.8
VPS39-205ENST00000562258 TTLL3Q9Y4R7 772 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 MYPNQ86TC9 1320 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 DGAT1O75907 488 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 KLRC1P26715 233 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 MAGEA1P43355 309 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 KCNJ6P48051 423 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 GABPAQ06546 454 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 COASYQ13057 564 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 ACVR2BQ13705 512 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 KIAA0753Q2KHM9 967 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 GPR142Q7Z601 462 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 TRIML1Q8N9V2 468 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 OR6B3Q8NGW1 331 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.08□□□□□ -0.8
VPS39-205ENST00000562258 NT5C1BQ96P26 610 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 TINF2Q9BSI4 451 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 PCDHB4Q9Y5E5 795 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 SNCAIPQ9Y6H5 919 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 ALS2Q96Q42 1657 aa10.08□□□□□ -0.8
VPS39-205ENST00000562258 DCDC2CA8MYV0 355 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 MAFGO15525 162 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 CCDC175P0C221 793 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 PRKAR2AP13861 404 aaKnown RBP10.07□□□□□ -0.8
VPS39-205ENST00000562258 ALDH5A1P51649 535 aaPredicted RBP10.07□□□□□ -0.8
VPS39-205ENST00000562258 GOLGA8FQ08AF8 430 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 GOLGA8DPQ0D2H9 430 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 SEZ6Q53EL9 994 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 ZC2HC1CQ53FD0 456 aaPredicted RBP10.07□□□□□ -0.8
VPS39-205ENST00000562258 UNC13DQ70J99 1090 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 CATSPER3Q86XQ3 398 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 U2AF1L4Q8WU68 220 aaKnown RBP10.07□□□□□ -0.8
VPS39-205ENST00000562258 UBXN4Q92575 508 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 CAPZA3Q96KX2 299 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 RIT2Q99578 217 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 UNC45AQ9H3U1 944 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 ARGLU1Q9NWB6 273 aaPredicted RBP10.07□□□□□ -0.8
VPS39-205ENST00000562258 FBXO2Q9UK22 296 aaPredicted RBP10.07□□□□□ -0.8
VPS39-205ENST00000562258 ESYT2A0FGR8 921 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 KRT86O43790 486 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 GNA14O95837 355 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 VTNP04004 478 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 ATP1A3P13637 1013 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 CCNE1P24864 410 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 ELF1P32519 619 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 LMAN1P49257 510 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 MYL7Q01449 175 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 IER5Q5VY09 327 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 NEK9Q8TD19 979 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 MKL1Q969V6 931 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 KATNAL1Q9BW62 490 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 DAPK3O43293 454 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 EYA4O95677 639 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 RAG1P15918 1043 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 PGM5Q15124 567 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 TLK2Q86UE8 772 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 GMLQ99445 158 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 SNX25Q9H3E2 840 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 USP20Q9Y2K6 914 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 PTPRZ1P23471 2315 aaPredicted RBP10.07□□□□□ -0.8
VPS39-205ENST00000562258 FAM86B1E9PN63 330 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 HBP1O60381 514 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 TACC1O75410 805 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 FAM86B2P0C5J1 330 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms