RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 CCDC172P0C7W6 258 aa15.21■□□□□ 0.03
VPS9D1-202ENST00000561976 PRKCIP41743 596 aa15.21■□□□□ 0.03
VPS9D1-202ENST00000561976 NOVP48745 357 aa15.21■□□□□ 0.03
VPS9D1-202ENST00000561976 PABPC4Q13310 644 aaKnown RBP eCLIP15.21■□□□□ 0.03
VPS9D1-202ENST00000561976 GRAPQ13588 217 aa15.21■□□□□ 0.03
VPS9D1-202ENST00000561976 ADAT2Q7Z6V5 191 aaKnown RBP15.21■□□□□ 0.03
VPS9D1-202ENST00000561976 NT5DC3Q86UY8 548 aa15.21■□□□□ 0.03
VPS9D1-202ENST00000561976 RASGEF1CQ8N431 466 aa15.21■□□□□ 0.03
VPS9D1-202ENST00000561976 GRAPLQ8TC17 118 aaPredicted RBP15.21■□□□□ 0.03
VPS9D1-202ENST00000561976 CD209Q9NNX6 404 aa15.21■□□□□ 0.03
VPS9D1-202ENST00000561976 A1CFQ9NQ94 594 aaKnown RBP15.21■□□□□ 0.03
VPS9D1-202ENST00000561976 GCNT4Q9P109 453 aa15.21■□□□□ 0.03
VPS9D1-202ENST00000561976 F8VZ95 297 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 DNM1LO00429 736 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 GNPATO15228 680 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 SLC12A3P55017 1021 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 SPRED3Q2MJR0 410 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 ANKRD20A8PQ5CZ79 823 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 MFSD14BQ5SR56 506 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 DPY19L2P1Q6NXN4 242 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 KCTD1Q719H9 257 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 GIMAP7Q8NHV1 300 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 FMO2Q99518 471 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 NAP1L4Q99733 375 aaKnown RBP15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 HAUS2Q9NVX0 235 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 AJAP1Q9UKB5 411 aaPredicted RBP15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 TRAF3IP3Q9Y228 551 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 STXBP5LQ9Y2K9 1186 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 PITPNM2Q9BZ72 1349 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 BHMG1C9JSJ3 638 aaPredicted RBP15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 DDX3XO00571 662 aaKnown RBP eCLIP15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 AKAP3O75969 853 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 TTLL1O95922 423 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 SNHG28P0DPA3 235 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 GALCP54803 685 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 EPHA7Q15375 998 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 SNCBQ16143 134 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 SLFN11Q7Z7L1 901 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 MDM1Q8TC05 714 aa15.2■□□□□ 0.02
VPS9D1-202ENST00000561976 ZBTB5O15062 677 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 CLIC2O15247 247 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 UFL1O94874 794 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 ZBTB48P10074 688 aaPredicted RBP15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 RFC4P35249 363 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 PSMC6P62333 389 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 GIT2Q14161 759 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 ARMC9Q7Z3E5 817 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 CEP57Q86XR8 500 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 SLF2Q8IX21 1173 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 RAB17Q9H0T7 212 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 SWAP70Q9UH65 585 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 PCDHB13Q9Y5F0 798 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 A0A0A6YYK5 440 aaPredicted RBP15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 FRMD3A2A2Y4 597 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 ABCB4P21439 1286 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 CASP4P49662 377 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 CYB5D1Q6P9G0 228 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 PARP9Q8IXQ6 854 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 TATDN2Q93075 761 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 SCLT1Q96NL6 688 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 REEP2Q9BRK0 252 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 LRRC4CQ9HCJ2 640 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 OSGEPQ9NPF4 335 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 DNM3Q9UQ16 869 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 RTCBQ9Y3I0 505 aaKnown RBP15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 CNTNAP4Q9C0A0 1308 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 MPHOSPH10O00566 681 aaKnown RBP15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 NR3C1P04150 777 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 PAEPP09466 180 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 FERP16591 822 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 RPL13P26373 211 aaKnown RBP15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 ANXA13P27216 316 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 CATSPER3Q86XQ3 398 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 FUKQ8N0W3 1084 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 HES6Q96HZ4 224 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 CNOT10Q9H9A5 744 aaKnown RBP15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 METTL14Q9HCE5 456 aaKnown RBP15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 PNMA2Q9UL42 364 aa15.19■□□□□ 0.02
VPS9D1-202ENST00000561976 TLDC2A0PJX2 215 aa15.18■□□□□ 0.02
VPS9D1-202ENST00000561976 C5orf60A6NFR6 353 aa15.18■□□□□ 0.02
VPS9D1-202ENST00000561976 PDXKO00764 312 aa15.18■□□□□ 0.02
VPS9D1-202ENST00000561976 BUB1BO60566 1050 aaPredicted RBP15.18■□□□□ 0.02
VPS9D1-202ENST00000561976 CTNND1O60716 968 aaKnown RBP15.18■□□□□ 0.02
VPS9D1-202ENST00000561976 GCNT3O95395 438 aa15.18■□□□□ 0.02
VPS9D1-202ENST00000561976 COPB2P35606 906 aa15.18■□□□□ 0.02
VPS9D1-202ENST00000561976 STAT1P42224 750 aa15.18■□□□□ 0.02
VPS9D1-202ENST00000561976 SCTRP47872 440 aa15.18■□□□□ 0.02
VPS9D1-202ENST00000561976 EIF3BP55884 814 aaKnown RBP15.18■□□□□ 0.02
VPS9D1-202ENST00000561976 GPSM2P81274 684 aa15.18■□□□□ 0.02
VPS9D1-202ENST00000561976 SF3A3Q12874 501 aaKnown RBP eCLIP15.18■□□□□ 0.028e-7■■■■□ 19.7
VPS9D1-202ENST00000561976 SELENOSQ9BQE4 189 aa15.18■□□□□ 0.02
VPS9D1-202ENST00000561976 SIX2Q9NPC8 291 aa15.18■□□□□ 0.02
VPS9D1-202ENST00000561976 INTUQ9ULD6 942 aa15.18■□□□□ 0.02
VPS9D1-202ENST00000561976 NR2E1Q9Y466 385 aa15.18■□□□□ 0.02
VPS9D1-202ENST00000561976 WNK3Q9BYP7 1800 aa15.18■□□□□ 0.02
VPS9D1-202ENST00000561976 CAND2O75155 1236 aa15.18■□□□□ 0.02
VPS9D1-202ENST00000561976 RPS6KA4O75676 772 aa15.18■□□□□ 0.02
VPS9D1-202ENST00000561976 HOXD13P35453 343 aa15.18■□□□□ 0.02
VPS9D1-202ENST00000561976 DR1Q01658 176 aa15.18■□□□□ 0.02
VPS9D1-202ENST00000561976 HOOK3Q86VS8 718 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms