RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 PTH1RQ03431 593 aa7.13□□□□□ -1.27
VPS13C-208ENST00000559119 ABHD18Q0P651 414 aa7.13□□□□□ -1.27
VPS13C-208ENST00000559119 FHL2Q14192 279 aa7.13□□□□□ -1.27
VPS13C-208ENST00000559119 NAALADL2Q58DX5 795 aa7.13□□□□□ -1.27
VPS13C-208ENST00000559119 FILIP1Q7Z7B0 1213 aa7.13□□□□□ -1.27
VPS13C-208ENST00000559119 C1orf210Q8IVY1 113 aa7.13□□□□□ -1.27
VPS13C-208ENST00000559119 CISD2Q8N5K1 135 aaKnown RBP7.13□□□□□ -1.27
VPS13C-208ENST00000559119 OR10A5Q9H207 317 aa7.13□□□□□ -1.27
VPS13C-208ENST00000559119 Q9UFV3 132 aa7.13□□□□□ -1.27
VPS13C-208ENST00000559119 MRPS23Q9Y3D9 190 aaKnown RBP7.13□□□□□ -1.27
VPS13C-208ENST00000559119 ZNF202O95125 648 aa7.12□□□□□ -1.27
VPS13C-208ENST00000559119 MMEP08473 750 aa7.12□□□□□ -1.27
VPS13C-208ENST00000559119 TGFB2P61812 414 aa7.12□□□□□ -1.27
VPS13C-208ENST00000559119 PCOLCEQ15113 449 aa7.12□□□□□ -1.27
VPS13C-208ENST00000559119 LONRF2Q1L5Z9 754 aa7.12□□□□□ -1.27
VPS13C-208ENST00000559119 LRSAM1Q6UWE0 723 aa7.12□□□□□ -1.27
VPS13C-208ENST00000559119 MAMDC4Q6UXC1 1216 aa7.12□□□□□ -1.27
VPS13C-208ENST00000559119 AMNQ9BXJ7 453 aa7.12□□□□□ -1.27
VPS13C-208ENST00000559119 TANGO6Q9C0B7 1094 aa7.12□□□□□ -1.27
VPS13C-208ENST00000559119 OR10A2Q9H208 303 aa7.12□□□□□ -1.27
VPS13C-208ENST00000559119 NDOR1Q9UHB4 597 aa7.12□□□□□ -1.27
VPS13C-208ENST00000559119 EFCAB14O75071 495 aa7.11□□□□□ -1.27
VPS13C-208ENST00000559119 MPIG6BO95866 241 aa7.11□□□□□ -1.27
VPS13C-208ENST00000559119 MSX2P35548 267 aaPredicted RBP7.11□□□□□ -1.27
VPS13C-208ENST00000559119 MRE11P49959 708 aa7.11□□□□□ -1.27
VPS13C-208ENST00000559119 DUSP8Q13202 625 aa7.11□□□□□ -1.27
VPS13C-208ENST00000559119 MOGSQ13724 837 aa7.11□□□□□ -1.27
VPS13C-208ENST00000559119 LSM12Q3MHD2 195 aaKnown RBP7.11□□□□□ -1.27
VPS13C-208ENST00000559119 CRB2Q5IJ48 1285 aa7.11□□□□□ -1.27
VPS13C-208ENST00000559119 TMEM200BQ69YZ2 307 aa7.11□□□□□ -1.27
VPS13C-208ENST00000559119 TRIM68Q6AZZ1 485 aa7.11□□□□□ -1.27
VPS13C-208ENST00000559119 HIPK4Q8NE63 616 aa7.11□□□□□ -1.27
VPS13C-208ENST00000559119 CFHR4Q92496 578 aa7.11□□□□□ -1.27
VPS13C-208ENST00000559119 KCNH7Q9NS40 1196 aa7.11□□□□□ -1.27
VPS13C-208ENST00000559119 IGSF5Q9NSI5 407 aa7.11□□□□□ -1.27
VPS13C-208ENST00000559119 PLA2G3Q9NZ20 509 aa7.11□□□□□ -1.27
VPS13C-208ENST00000559119 FAM184BQ9ULE4 1060 aa7.11□□□□□ -1.27
VPS13C-208ENST00000559119 HIBADHP31937 336 aaKnown RBP7.1□□□□□ -1.27
VPS13C-208ENST00000559119 MCM7P33993 719 aa7.1□□□□□ -1.27
VPS13C-208ENST00000559119 HHEXQ03014 270 aa7.1□□□□□ -1.27
VPS13C-208ENST00000559119 SEC23AQ15436 765 aa7.1□□□□□ -1.27
VPS13C-208ENST00000559119 ZC3H12BQ5HYM0 836 aaKnown RBP7.1□□□□□ -1.27
VPS13C-208ENST00000559119 KANK2Q63ZY3 851 aa7.1□□□□□ -1.27
VPS13C-208ENST00000559119 GRAMD4Q6IC98 578 aa7.1□□□□□ -1.27
VPS13C-208ENST00000559119 ZNF808Q8N4W9 903 aaPredicted RBP7.1□□□□□ -1.27
VPS13C-208ENST00000559119 OR14K1Q8NGZ2 314 aa7.1□□□□□ -1.27
VPS13C-208ENST00000559119 ASB15Q8WXK1 588 aa7.1□□□□□ -1.27
VPS13C-208ENST00000559119 GBP4Q96PP9 640 aa7.1□□□□□ -1.27
VPS13C-208ENST00000559119 PLEKHG4BQ96PX9 1271 aa7.1□□□□□ -1.27
VPS13C-208ENST00000559119 NELFAQ9H3P2 528 aa7.1□□□□□ -1.27
VPS13C-208ENST00000559119 SLC52A2Q9HAB3 445 aa7.1□□□□□ -1.27
VPS13C-208ENST00000559119 COQ6Q9Y2Z9 468 aa7.1□□□□□ -1.27
VPS13C-208ENST00000559119 PRAMEF22A3QJZ6 481 aa7.09□□□□□ -1.27
VPS13C-208ENST00000559119 PLSCR1O15162 318 aa7.09□□□□□ -1.27
VPS13C-208ENST00000559119 FOXP2O15409 715 aa7.09□□□□□ -1.27
VPS13C-208ENST00000559119 ACRV1P26436 265 aa7.09□□□□□ -1.27
VPS13C-208ENST00000559119 DGCR2P98153 550 aa7.09□□□□□ -1.27
VPS13C-208ENST00000559119 FOXL1Q12952 345 aa7.09□□□□□ -1.27
VPS13C-208ENST00000559119 GRM7Q14831 915 aa7.09□□□□□ -1.27
VPS13C-208ENST00000559119 NOSTRINQ8IVI9 506 aa7.09□□□□□ -1.27
VPS13C-208ENST00000559119 MAGEB10Q96LZ2 347 aaPredicted RBP7.09□□□□□ -1.27
VPS13C-208ENST00000559119 TLR9Q9NR96 1032 aa7.09□□□□□ -1.27
VPS13C-208ENST00000559119 ASB1Q9Y576 335 aa7.09□□□□□ -1.27
VPS13C-208ENST00000559119 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.08□□□□□ -1.28
VPS13C-208ENST00000559119 E9PSI1 815 aa7.08□□□□□ -1.28
VPS13C-208ENST00000559119 STAT5BP51692 787 aa7.08□□□□□ -1.28
VPS13C-208ENST00000559119 IGFL4Q6B9Z1 124 aa7.08□□□□□ -1.28
VPS13C-208ENST00000559119 SGMS1Q86VZ5 419 aa7.08□□□□□ -1.28
VPS13C-208ENST00000559119 CALML6Q8TD86 181 aa7.08□□□□□ -1.28
VPS13C-208ENST00000559119 HIRIP3Q9BW71 556 aaPredicted RBP7.08□□□□□ -1.28
VPS13C-208ENST00000559119 CELF4Q9BZC1 486 aaKnown RBP7.08□□□□□ -1.28
VPS13C-208ENST00000559119 SLC12A8A0AV02 714 aa7.07□□□□□ -1.28
VPS13C-208ENST00000559119 NARSO43776 548 aaKnown RBP7.07□□□□□ -1.28
VPS13C-208ENST00000559119 HIP1RO75146 1068 aa7.07□□□□□ -1.28
VPS13C-208ENST00000559119 RASGRP1O95267 797 aa7.07□□□□□ -1.28
VPS13C-208ENST00000559119 C1SP09871 688 aa7.07□□□□□ -1.28
VPS13C-208ENST00000559119 GTF2F1P35269 517 aaKnown RBP eCLIP7.07□□□□□ -1.28
VPS13C-208ENST00000559119 TMEM132BQ14DG7 1078 aa7.07□□□□□ -1.28
VPS13C-208ENST00000559119 KRTAP5-3Q6L8H2 238 aa7.07□□□□□ -1.28
VPS13C-208ENST00000559119 SHCBP1Q8NEM2 672 aa7.07□□□□□ -1.28
VPS13C-208ENST00000559119 IL17DQ8TAD2 202 aa7.07□□□□□ -1.28
VPS13C-208ENST00000559119 SLC26A4O43511 780 aa7.06□□□□□ -1.28
VPS13C-208ENST00000559119 APEX1P27695 318 aaKnown RBP7.06□□□□□ -1.28
VPS13C-208ENST00000559119 MAP3K12Q12852 859 aa7.06□□□□□ -1.28
VPS13C-208ENST00000559119 TM4SF20Q53R12 229 aa7.06□□□□□ -1.28
VPS13C-208ENST00000559119 ADGRE4PQ86SQ3 457 aa7.06□□□□□ -1.28
VPS13C-208ENST00000559119 GPR135Q8IZ08 494 aa7.06□□□□□ -1.28
VPS13C-208ENST00000559119 D2HGDHQ8N465 521 aa7.06□□□□□ -1.28
VPS13C-208ENST00000559119 GSTCDQ8NEC7 633 aa7.06□□□□□ -1.28
VPS13C-208ENST00000559119 DEPDC7Q96QD5 511 aa7.06□□□□□ -1.28
VPS13C-208ENST00000559119 AURKAIP1Q9NWT8 199 aaPredicted RBP7.06□□□□□ -1.28
VPS13C-208ENST00000559119 SFMBT1Q9UHJ3 866 aa7.06□□□□□ -1.28
VPS13C-208ENST00000559119 B3GALT1Q9Y5Z6 326 aa7.06□□□□□ -1.28
VPS13C-208ENST00000559119 WDR33Q9C0J8 1336 aaKnown RBP7.05□□□□□ -1.28
VPS13C-208ENST00000559119 SDHAP31040 664 aa7.05□□□□□ -1.28
VPS13C-208ENST00000559119 HGFACQ04756 655 aa7.05□□□□□ -1.28
VPS13C-208ENST00000559119 RASA3Q14644 834 aa7.05□□□□□ -1.28
VPS13C-208ENST00000559119 FSTL4Q6MZW2 842 aa7.05□□□□□ -1.28
VPS13C-208ENST00000559119 LRP10Q7Z4F1 713 aa7.05□□□□□ -1.28
VPS13C-208ENST00000559119 C2orf69Q8N8R5 385 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms