RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 ZNF124Q15973 351 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 FSCN1Q16658 493 aaKnown RBP3.95□□□□□ -1.78
TRAV28-201ENST00000557548 LONRF1Q17RB8 773 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 CPEB4Q17RY0 729 aaKnown RBP eCLIP3.95□□□□□ -1.78
TRAV28-201ENST00000557548 UAP1L1Q3KQV9 507 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 INO80DQ53TQ3 878 aaPredicted RBP3.95□□□□□ -1.78
TRAV28-201ENST00000557548 ATAT1Q5SQI0 421 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 CATSPEREQ5SY80 951 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 XRRA1Q6P2D8 792 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 CCDC62Q6P9F0 684 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 KCTD1Q719H9 257 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 SIRT2Q8IXJ6 389 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 NLGN4XQ8N0W4 816 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 PLD6Q8N2A8 252 aaKnown RBP3.95□□□□□ -1.78
TRAV28-201ENST00000557548 FAM156AQ8NDB6 213 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 PPP1R35Q8TAP8 253 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 SSH1Q8WYL5 1049 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 HHIPL1Q96JK4 782 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 C16orf92Q96LL3 132 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 FAM193BQ96PV7 902 aaPredicted RBP3.95□□□□□ -1.78
TRAV28-201ENST00000557548 MAP3K14Q99558 947 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 MTA3Q9BTC8 594 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 FAM204AQ9H8W3 233 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 MKNK2Q9HBH9 465 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 SLC6A20Q9NP91 592 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 PLCB1Q9NQ66 1216 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 KLHL11Q9NVR0 708 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP3.95□□□□□ -1.78
TRAV28-201ENST00000557548 TUBD1Q9UJT1 453 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 PPP2R3BQ9Y5P8 575 aa3.95□□□□□ -1.78
TRAV28-201ENST00000557548 PRAMEF25A6NGN4 478 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 FAM90A27PA6NNH2 459 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 FADS2P1A8MWK0 482 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 SLC27A2O14975 620 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 BUB1BO60566 1050 aaPredicted RBP3.94□□□□□ -1.78
TRAV28-201ENST00000557548 ZBED1O96006 694 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 C4BPAP04003 597 aaKnown RBP3.94□□□□□ -1.78
TRAV28-201ENST00000557548 LPLP06858 475 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 POU2F2P09086 479 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 PTPN1P18031 435 aaKnown RBP3.94□□□□□ -1.78
TRAV28-201ENST00000557548 SPINK2P20155 84 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 TACR1P25103 407 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 FNTBP49356 437 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 GJA9P57773 515 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 MOGSQ13724 837 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 RAPGEF1Q13905 1077 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 UGT8Q16880 541 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 PITRM1Q5JRX3 1037 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 ZBTB41Q5SVQ8 909 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 MROH9Q5TGP6 573 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 ANO1Q5XXA6 986 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 STEAP3Q658P3 488 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 C1orf228Q6PIY5 440 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 CCDC149Q6ZUS6 474 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 TOGARAM2Q6ZUX3 1019 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 OVCH2Q7RTZ1 564 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 KCNK18Q7Z418 384 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 SRGAP1Q7Z6B7 1085 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 SRLQ86TD4 932 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 SLCO6A1Q86UG4 719 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 SKAP1Q86WV1 359 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 RIOX2Q8IUF8 465 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 FAM43AQ8N2R8 423 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 CAMKK1Q8N5S9 505 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 LZTR1Q8N653 840 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 PPM1NQ8N819 430 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 C7orf31Q8N865 590 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 ENAHQ8N8S7 591 aaPredicted RBP3.94□□□□□ -1.78
TRAV28-201ENST00000557548 PPM1EQ8WY54 764 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 ERCC4Q92889 916 aaPredicted RBP3.94□□□□□ -1.78
TRAV28-201ENST00000557548 MAP6Q96JE9 813 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 TNIP3Q96KP6 325 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 NAA15Q9BXJ9 866 aaKnown RBP3.94□□□□□ -1.78
TRAV28-201ENST00000557548 OSBPL1AQ9BXW6 950 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 POFUT1Q9H488 388 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 NLRC4Q9NPP4 1024 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 RIC8BQ9NVN3 520 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 GNL3LQ9NVN8 582 aaKnown RBP3.94□□□□□ -1.78
TRAV28-201ENST00000557548 USP36Q9P275 1121 aaKnown RBP3.94□□□□□ -1.78
TRAV28-201ENST00000557548 TNFRSF10DQ9UBN6 386 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 KCNG1Q9UIX4 513 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 DMTF1Q9Y222 760 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 TELO2Q9Y4R8 837 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 PCDHGB6Q9Y5F9 930 aa3.94□□□□□ -1.78
TRAV28-201ENST00000557548 PRSS38A1L453 326 aa3.93□□□□□ -1.78
TRAV28-201ENST00000557548 FOXP2O15409 715 aa3.93□□□□□ -1.78
TRAV28-201ENST00000557548 PQBP1O60828 265 aaKnown RBP3.93□□□□□ -1.78
TRAV28-201ENST00000557548 USP2O75604 605 aaPredicted RBP3.93□□□□□ -1.78
TRAV28-201ENST00000557548 APOL3O95236 402 aa3.93□□□□□ -1.78
TRAV28-201ENST00000557548 NTRK1P04629 796 aa3.93□□□□□ -1.78
TRAV28-201ENST00000557548 MMEP08473 750 aa3.93□□□□□ -1.78
TRAV28-201ENST00000557548 SLC5A1P13866 664 aa3.93□□□□□ -1.78
TRAV28-201ENST00000557548 SDHAP31040 664 aa3.93□□□□□ -1.78
TRAV28-201ENST00000557548 GJA4P35212 333 aa3.93□□□□□ -1.78
TRAV28-201ENST00000557548 AK2P54819 239 aa3.93□□□□□ -1.78
TRAV28-201ENST00000557548 MRPS9P82933 396 aaKnown RBP3.93□□□□□ -1.78
TRAV28-201ENST00000557548 STK3Q13188 491 aa3.93□□□□□ -1.78
TRAV28-201ENST00000557548 TUSC3Q13454 348 aa3.93□□□□□ -1.78
TRAV28-201ENST00000557548 ZNF648Q5T619 568 aaPredicted RBP3.93□□□□□ -1.78
TRAV28-201ENST00000557548 BTBD8Q5XKL5 378 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms