RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 SMIM35A0A1B0GVV1 85 aa15.22■□□□□ 0.03
SHMT2-228ENST00000557302 MAGEB2O15479 319 aa15.22■□□□□ 0.03
SHMT2-228ENST00000557302 SLITRK3O94933 977 aa15.22■□□□□ 0.03
SHMT2-228ENST00000557302 STBD1O95210 358 aa15.22■□□□□ 0.03
SHMT2-228ENST00000557302 BMP15O95972 392 aa15.22■□□□□ 0.03
SHMT2-228ENST00000557302 ATP2C1P98194 919 aaPredicted RBP15.22■□□□□ 0.03
SHMT2-228ENST00000557302 SHHQ15465 462 aa15.22■□□□□ 0.03
SHMT2-228ENST00000557302 MTERF2Q49AM1 385 aa15.22■□□□□ 0.03
SHMT2-228ENST00000557302 C9orf50Q5SZB4 431 aa15.22■□□□□ 0.03
SHMT2-228ENST00000557302 DTHD1Q6ZMT9 781 aa15.22■□□□□ 0.03
SHMT2-228ENST00000557302 C16orf59Q7L2K0 433 aa15.22■□□□□ 0.03
SHMT2-228ENST00000557302 HSD17B14Q9BPX1 270 aa15.22■□□□□ 0.03
SHMT2-228ENST00000557302 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.22■□□□□ 0.03
SHMT2-228ENST00000557302 FTOQ9C0B1 505 aaKnown RBP eCLIP15.22■□□□□ 0.03
SHMT2-228ENST00000557302 ZSCAN16Q9H4T2 348 aaPredicted RBP15.22■□□□□ 0.03
SHMT2-228ENST00000557302 WRAP73Q9P2S5 460 aaPredicted RBP15.22■□□□□ 0.03
SHMT2-228ENST00000557302 LAMA2P24043 3122 aaKnown RBP15.21■□□□□ 0.03
SHMT2-228ENST00000557302 TMEM150BA6NC51 233 aa15.21■□□□□ 0.03
SHMT2-228ENST00000557302 FGBP02675 491 aa15.21■□□□□ 0.03
SHMT2-228ENST00000557302 YWHABP31946 246 aaKnown RBP15.21■□□□□ 0.03
SHMT2-228ENST00000557302 MRPS6P82932 125 aaKnown RBP15.21■□□□□ 0.03
SHMT2-228ENST00000557302 TBC1D8BQ0IIM8 1120 aa15.21■□□□□ 0.03
SHMT2-228ENST00000557302 PDIA5Q14554 519 aa15.21■□□□□ 0.03
SHMT2-228ENST00000557302 TARBP2Q15633 366 aaKnown RBP15.21■□□□□ 0.03
SHMT2-228ENST00000557302 FAM26DQ5JW98 314 aa15.21■□□□□ 0.03
SHMT2-228ENST00000557302 TMEM240Q5SV17 173 aa15.21■□□□□ 0.03
SHMT2-228ENST00000557302 HAUS3Q68CZ6 603 aa15.21■□□□□ 0.03
SHMT2-228ENST00000557302 ZNF365Q70YC5 407 aa15.21■□□□□ 0.03
SHMT2-228ENST00000557302 ANO5Q75V66 913 aa15.21■□□□□ 0.03
SHMT2-228ENST00000557302 OTUD6AQ7L8S5 288 aa15.21■□□□□ 0.03
SHMT2-228ENST00000557302 NME8Q8N427 588 aa15.21■□□□□ 0.03
SHMT2-228ENST00000557302 METTL13Q8N6R0 699 aa15.21■□□□□ 0.03
SHMT2-228ENST00000557302 RNPC3Q96LT9 517 aaKnown RBP15.21■□□□□ 0.03
SHMT2-228ENST00000557302 TUFT1Q9NNX1 390 aa15.21■□□□□ 0.03
SHMT2-228ENST00000557302 LRWD1Q9UFC0 647 aa15.21■□□□□ 0.03
SHMT2-228ENST00000557302 TANC1Q9C0D5 1861 aa15.2■□□□□ 0.02
SHMT2-228ENST00000557302 M0QZ92 97 aa15.2■□□□□ 0.02
SHMT2-228ENST00000557302 NBNO60934 754 aa15.2■□□□□ 0.02
SHMT2-228ENST00000557302 LYPLA2O95372 231 aa15.2■□□□□ 0.02
SHMT2-228ENST00000557302 CXCL10P02778 98 aa15.2■□□□□ 0.02
SHMT2-228ENST00000557302 TMOD1P28289 359 aa15.2■□□□□ 0.02
SHMT2-228ENST00000557302 MBTPS1Q14703 1052 aa15.2■□□□□ 0.02
SHMT2-228ENST00000557302 GPNMBQ14956 572 aa15.2■□□□□ 0.02
SHMT2-228ENST00000557302 SF3A1Q15459 793 aaKnown RBP15.2■□□□□ 0.02
SHMT2-228ENST00000557302 IER5Q5VY09 327 aa15.2■□□□□ 0.02
SHMT2-228ENST00000557302 ARL6IP4Q66PJ3 421 aaKnown RBP15.2■□□□□ 0.02
SHMT2-228ENST00000557302 PLA2G4FQ68DD2 849 aa15.2■□□□□ 0.02
SHMT2-228ENST00000557302 KIAA0319LQ8IZA0 1049 aa15.2■□□□□ 0.02
SHMT2-228ENST00000557302 IGSF22Q8N9C0 903 aa15.2■□□□□ 0.02
SHMT2-228ENST00000557302 VWCEQ96DN2 955 aa15.2■□□□□ 0.02
SHMT2-228ENST00000557302 CEP170P1Q96L14 293 aa15.2■□□□□ 0.02
SHMT2-228ENST00000557302 MAP7D2Q96T17 732 aa15.2■□□□□ 0.02
SHMT2-228ENST00000557302 SH2D3AQ9BRG2 576 aa15.2■□□□□ 0.02
SHMT2-228ENST00000557302 POLR3CQ9BUI4 534 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-228ENST00000557302 MTIF3Q9H2K0 278 aaKnown RBP15.2■□□□□ 0.02
SHMT2-228ENST00000557302 CYP26B1Q9NR63 512 aa15.2■□□□□ 0.02
SHMT2-228ENST00000557302 PPME1Q9Y570 386 aa15.2■□□□□ 0.02
SHMT2-228ENST00000557302 STK24Q9Y6E0 443 aa15.2■□□□□ 0.02
SHMT2-228ENST00000557302 WDR81Q562E7 1941 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 MED24O75448 989 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 CHRNA1P02708 482 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 SPATA31C1P0DKV0 1188 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 ZSCAN22P10073 491 aaPredicted RBP15.19■□□□□ 0.02
SHMT2-228ENST00000557302 ACTN1P12814 892 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 RPA1P27694 616 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 CLCN3P51790 818 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 NPEPPSP55786 919 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 MGAT3Q09327 533 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 TMEM62Q0P6H9 643 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 IL17AQ16552 155 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 XKR9Q5GH70 373 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 EFCAB12Q6NXP0 572 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 FAM173BQ6P4H8 233 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 CATSPER3Q86XQ3 398 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 LRRC71Q8N4P6 559 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 HERVK_113Q902F9 699 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 CCDC43Q96MW1 224 aaKnown RBP15.19■□□□□ 0.02
SHMT2-228ENST00000557302 CEP89Q96ST8 783 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 JPH2Q9BR39 696 aaPredicted RBP15.19■□□□□ 0.02
SHMT2-228ENST00000557302 SUGCTQ9HAC7 445 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 TRPV2Q9Y5S1 764 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 CDY2AQ9Y6F7 541 aa15.19■□□□□ 0.02
SHMT2-228ENST00000557302 VWA3AA6NCI4 1184 aa15.18■□□□□ 0.02
SHMT2-228ENST00000557302 ZBTB39O15060 712 aa15.18■□□□□ 0.02
SHMT2-228ENST00000557302 MAFO75444 373 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-228ENST00000557302 MUTP22033 750 aa15.18■□□□□ 0.02
SHMT2-228ENST00000557302 CCT6AP40227 531 aaKnown RBP15.18■□□□□ 0.02
SHMT2-228ENST00000557302 FOXD4L5Q5VV16 416 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-228ENST00000557302 KRT79Q5XKE5 535 aa15.18■□□□□ 0.02
SHMT2-228ENST00000557302 OTOP2Q7RTS6 562 aa15.18■□□□□ 0.02
SHMT2-228ENST00000557302 EXOC8Q8IYI6 725 aa15.18■□□□□ 0.02
SHMT2-228ENST00000557302 LINC01465Q8N7H1 131 aa15.18■□□□□ 0.02
SHMT2-228ENST00000557302 SNX29Q8TEQ0 813 aa15.18■□□□□ 0.02
SHMT2-228ENST00000557302 FOXD4L4Q8WXT5 416 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-228ENST00000557302 SLC7A3Q8WY07 619 aa15.18■□□□□ 0.02
SHMT2-228ENST00000557302 NACC1Q96RE7 527 aa15.18■□□□□ 0.02
SHMT2-228ENST00000557302 ANKEF1Q9NU02 776 aa15.18■□□□□ 0.02
SHMT2-228ENST00000557302 AKT3Q9Y243 479 aa15.18■□□□□ 0.02
SHMT2-228ENST00000557302 CLIC4Q9Y696 253 aa15.18■□□□□ 0.02
SHMT2-228ENST00000557302 IGKV6-21A0A0C4DH24 114 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms