RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 NDUFV1P49821 464 aa20.83■□□□□ 0.93
VIPAS39-209ENST00000556909 FAM160B1Q5W0V3 765 aa20.83■□□□□ 0.93
VIPAS39-209ENST00000556909 DHX32Q7L7V1 743 aaKnown RBP20.83■□□□□ 0.93
VIPAS39-209ENST00000556909 POF1BQ8WVV4 589 aa20.83■□□□□ 0.93
VIPAS39-209ENST00000556909 PPP2R3CQ969Q6 453 aa20.83■□□□□ 0.93
VIPAS39-209ENST00000556909 GLT8D2Q9H1C3 349 aa20.83■□□□□ 0.93
VIPAS39-209ENST00000556909 ERVK-5Q9HDB9 667 aa20.83■□□□□ 0.93
VIPAS39-209ENST00000556909 FAM217BQ9NTX9 383 aaPredicted RBP20.83■□□□□ 0.93
VIPAS39-209ENST00000556909 LRFN2Q9ULH4 789 aa20.83■□□□□ 0.93
VIPAS39-209ENST00000556909 GINS2Q9Y248 185 aa20.83■□□□□ 0.93
VIPAS39-209ENST00000556909 KLF18A0A0U1RQI7 1052 aa20.82■□□□□ 0.92
VIPAS39-209ENST00000556909 IBSPP21815 317 aaPredicted RBP20.82■□□□□ 0.92
VIPAS39-209ENST00000556909 CDC27P30260 824 aa20.82■□□□□ 0.92
VIPAS39-209ENST00000556909 NFX1Q12986 1120 aaKnown RBP20.82■□□□□ 0.92
VIPAS39-209ENST00000556909 ADCK5Q3MIX3 580 aa20.82■□□□□ 0.92
VIPAS39-209ENST00000556909 BMP2KLQ5H9B9 411 aa20.82■□□□□ 0.92
VIPAS39-209ENST00000556909 RASEFQ8IZ41 740 aa20.82■□□□□ 0.92
VIPAS39-209ENST00000556909 TMEM40Q8WWA1 233 aa20.82■□□□□ 0.92
VIPAS39-209ENST00000556909 MSLNLQ96KJ4 702 aa20.82■□□□□ 0.92
VIPAS39-209ENST00000556909 UPF3BQ9BZI7 483 aaKnown RBP20.82■□□□□ 0.92
VIPAS39-209ENST00000556909 CDHR5Q9HBB8 845 aa20.82■□□□□ 0.92
VIPAS39-209ENST00000556909 ZNF302Q9NR11 478 aa20.82■□□□□ 0.92
VIPAS39-209ENST00000556909 NOC2LQ9Y3T9 749 aaKnown RBP20.82■□□□□ 0.92
VIPAS39-209ENST00000556909 TECTAO75443 2155 aa20.82■□□□□ 0.92
VIPAS39-209ENST00000556909 IGLV3-22A0A075B6J6 115 aa20.81■□□□□ 0.92
VIPAS39-209ENST00000556909 ZBTB42B2RXF5 422 aa20.81■□□□□ 0.92
VIPAS39-209ENST00000556909 DHX15O43143 795 aaKnown RBP20.81■□□□□ 0.92
VIPAS39-209ENST00000556909 RPS6KA5O75582 802 aa20.81■□□□□ 0.92
VIPAS39-209ENST00000556909 JAKMIP3Q5VZ66 844 aa20.81■□□□□ 0.92
VIPAS39-209ENST00000556909 PDXDC2PQ6P474 469 aa20.81■□□□□ 0.92
VIPAS39-209ENST00000556909 PLA2G4DQ86XP0 818 aa20.81■□□□□ 0.92
VIPAS39-209ENST00000556909 KIAA0319LQ8IZA0 1049 aa20.81■□□□□ 0.92
VIPAS39-209ENST00000556909 EFHBQ8N7U6 833 aa20.81■□□□□ 0.92
VIPAS39-209ENST00000556909 CRYGNQ8WXF5 182 aa20.81■□□□□ 0.92
VIPAS39-209ENST00000556909 MUTYHQ9UIF7 546 aa20.81■□□□□ 0.92
VIPAS39-209ENST00000556909 EYA4O95677 639 aa20.8■□□□□ 0.92
VIPAS39-209ENST00000556909 ATP4AP20648 1035 aa20.8■□□□□ 0.92
VIPAS39-209ENST00000556909 NRIP1P48552 1158 aa20.8■□□□□ 0.92
VIPAS39-209ENST00000556909 RCAN1P53805 252 aa20.8■□□□□ 0.92
VIPAS39-209ENST00000556909 TSGA10IPQ3SY00 556 aa20.8■□□□□ 0.92
VIPAS39-209ENST00000556909 ZNF484Q5JVG2 852 aa20.8■□□□□ 0.92
VIPAS39-209ENST00000556909 SKAP1Q86WV1 359 aa20.8■□□□□ 0.92
VIPAS39-209ENST00000556909 CLEC1BQ9P126 229 aa20.8■□□□□ 0.92
VIPAS39-209ENST00000556909 PCDHB7Q9Y5E2 793 aa20.8■□□□□ 0.92
VIPAS39-209ENST00000556909 PCDHGC5Q9Y5F6 944 aa20.8■□□□□ 0.92
VIPAS39-209ENST00000556909 DENND3A2RUS2 1198 aa20.79■□□□□ 0.92
VIPAS39-209ENST00000556909 IPO5O00410 1097 aaKnown RBP20.79■□□□□ 0.92
VIPAS39-209ENST00000556909 C22orf31O95567 290 aa20.79■□□□□ 0.92
VIPAS39-209ENST00000556909 GLP2RO95838 553 aa20.79■□□□□ 0.92
VIPAS39-209ENST00000556909 CYP3A4P08684 503 aa20.79■□□□□ 0.92
VIPAS39-209ENST00000556909 PFKFB3Q16875 520 aaPredicted RBP20.79■□□□□ 0.92
VIPAS39-209ENST00000556909 HERC4Q5GLZ8 1057 aaPredicted RBP20.79■□□□□ 0.92
VIPAS39-209ENST00000556909 SWSAP1Q6NVH7 229 aa20.79■□□□□ 0.92
VIPAS39-209ENST00000556909 MIS18BP1Q6P0N0 1132 aa20.79■□□□□ 0.92
VIPAS39-209ENST00000556909 FAM43BQ6ZT52 329 aaPredicted RBP20.79■□□□□ 0.92
VIPAS39-209ENST00000556909 RNF135Q8IUD6 432 aa20.79■□□□□ 0.92
VIPAS39-209ENST00000556909 SMRP1Q8NCR6 262 aa20.79■□□□□ 0.92
VIPAS39-209ENST00000556909 ADAM2Q99965 735 aa20.79■□□□□ 0.92
VIPAS39-209ENST00000556909 RGS18Q9NS28 235 aa20.79■□□□□ 0.92
VIPAS39-209ENST00000556909 C1orf112Q9NSG2 853 aa20.79■□□□□ 0.92
VIPAS39-209ENST00000556909 ST3GAL5Q9UNP4 418 aa20.79■□□□□ 0.92
VIPAS39-209ENST00000556909 C9IYK1 514 aa20.78■□□□□ 0.92
VIPAS39-209ENST00000556909 ADAMTS3O15072 1205 aa20.78■□□□□ 0.92
VIPAS39-209ENST00000556909 COASYQ13057 564 aa20.78■□□□□ 0.92
VIPAS39-209ENST00000556909 KRT32Q14532 448 aa20.78■□□□□ 0.92
VIPAS39-209ENST00000556909 FAM102BQ5T8I3 360 aa20.78■□□□□ 0.92
VIPAS39-209ENST00000556909 HFE2Q6ZVN8 426 aa20.78■□□□□ 0.92
VIPAS39-209ENST00000556909 RBM23Q86U06 439 aaKnown RBP20.78■□□□□ 0.92
VIPAS39-209ENST00000556909 PPP1R16BQ96T49 567 aa20.78■□□□□ 0.92
VIPAS39-209ENST00000556909 OSMRQ99650 979 aa20.78■□□□□ 0.92
VIPAS39-209ENST00000556909 HCSTQ9UBK5 93 aa20.78■□□□□ 0.92
VIPAS39-209ENST00000556909 NAP1L2Q9ULW6 460 aaPredicted RBP20.78■□□□□ 0.92
VIPAS39-209ENST00000556909 BARX2Q9UMQ3 279 aaPredicted RBP20.78■□□□□ 0.92
VIPAS39-209ENST00000556909 ESYT2A0FGR8 921 aa20.77■□□□□ 0.92
VIPAS39-209ENST00000556909 TBKBP1A7MCY6 615 aa20.77■□□□□ 0.92
VIPAS39-209ENST00000556909 GPR182O15218 404 aa20.77■□□□□ 0.92
VIPAS39-209ENST00000556909 PPFIA3O75145 1194 aa20.77■□□□□ 0.92
VIPAS39-209ENST00000556909 ADD1P35611 737 aaKnown RBP20.77■□□□□ 0.92
VIPAS39-209ENST00000556909 SETQ01105 290 aaPredicted RBP20.77■□□□□ 0.92
VIPAS39-209ENST00000556909 UBE3AQ05086 875 aa20.77■□□□□ 0.92
VIPAS39-209ENST00000556909 KIZQ2M2Z5 673 aa20.77■□□□□ 0.92
VIPAS39-209ENST00000556909 ODR4Q5SWX8 454 aa20.77■□□□□ 0.92
VIPAS39-209ENST00000556909 SPOUT1Q5T280 376 aaKnown RBP20.77■□□□□ 0.92
VIPAS39-209ENST00000556909 SLC24A5Q71RS6 500 aa20.77■□□□□ 0.92
VIPAS39-209ENST00000556909 FAM228AQ86W67 206 aa20.77■□□□□ 0.92
VIPAS39-209ENST00000556909 CKAP2LQ8IYA6 745 aa20.77■□□□□ 0.92
VIPAS39-209ENST00000556909 BBXQ8WY36 941 aaPredicted RBP20.77■□□□□ 0.92
VIPAS39-209ENST00000556909 ZNF577Q9BSK1 485 aa20.77■□□□□ 0.92
VIPAS39-209ENST00000556909 RNF216Q9NWF9 866 aaPredicted RBP20.77■□□□□ 0.92
VIPAS39-209ENST00000556909 PCDHB12Q9Y5F1 795 aa20.77■□□□□ 0.92
VIPAS39-209ENST00000556909 MAFBQ9Y5Q3 323 aaPredicted RBP20.77■□□□□ 0.92
VIPAS39-209ENST00000556909 VTNP04004 478 aa20.76■□□□□ 0.91
VIPAS39-209ENST00000556909 METAP2P50579 478 aaKnown RBP eCLIP20.76■□□□□ 0.91
VIPAS39-209ENST00000556909 CRYBB1P53674 252 aaPredicted RBP20.76■□□□□ 0.91
VIPAS39-209ENST00000556909 ZNF746Q6NUN9 644 aaPredicted RBP20.76■□□□□ 0.91
VIPAS39-209ENST00000556909 REXO1Q8N1G1 1221 aaKnown RBP20.76■□□□□ 0.91
VIPAS39-209ENST00000556909 ZMYND12Q9H0C1 365 aa20.76■□□□□ 0.91
VIPAS39-209ENST00000556909 TLR9Q9NR96 1032 aa20.76■□□□□ 0.91
VIPAS39-209ENST00000556909 AAASQ9NRG9 546 aa20.76■□□□□ 0.91
VIPAS39-209ENST00000556909 TBC1D22BQ9NU19 505 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms