RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 IL23AQ9NPF7 189 aa12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 WRAP73Q9P2S5 460 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 CLIC4Q9Y696 253 aa12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 A0A087WWV3 80 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 SMIM35A0A1B0GVV1 85 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 ZBTB42B2RXF5 422 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 M0QZ92 97 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 CAND2O75155 1236 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 MED24O75448 989 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 STBD1O95210 358 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 C22orf31O95567 290 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 F13A1P00488 732 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 BMP8BP34820 402 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 RFC2P35250 354 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 ANP32AP39687 249 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 EPHB4P54760 987 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 NPEPPSP55786 919 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 RBL2Q08999 1139 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 PDIA5Q14554 519 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 ZRSR1Q15695 479 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 IL17AQ16552 155 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 KRT79Q5XKE5 535 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 ARL6IP4Q66PJ3 421 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 EFCAB12Q6NXP0 572 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 ANO5Q75V66 913 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 CATSPER3Q86XQ3 398 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 LRRC71Q8N4P6 559 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 SNX29Q8TEQ0 813 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 PPP1R16BQ96T49 567 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 TUFT1Q9NNX1 390 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 CYP26B1Q9NR63 512 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 BMP2KQ9NSY1 1161 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 GINS2Q9Y248 185 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 STK24Q9Y6E0 443 aa12.81□□□□□ -0.36
CCDC88C-212ENST00000556767 CEP290O15078 2479 aa12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 PP2D1A8MPX8 630 aa12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 ZBTB39O15060 712 aa12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 PARNO95453 639 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 FGBP02675 491 aa12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 RPLP2P05387 115 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 TMOD1P28289 359 aa12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 MARCKSP29966 332 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 CDC25AP30304 524 aa12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 CLCN3P51790 818 aa12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 POLGP54098 1239 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 MRPS6P82932 125 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 STK38Q15208 465 aa12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 SHHQ15465 462 aa12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 TARBP2Q15633 366 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 C9orf50Q5SZB4 431 aa12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 IER5Q5VY09 327 aa12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 PSRC1Q6PGN9 363 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 ZNF365Q70YC5 407 aa12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 IGSF22Q8N9C0 903 aa12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 PIGOQ8TEQ8 1089 aa12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 USP28Q96RU2 1077 aa12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 MAP7D2Q96T17 732 aa12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 POLR3CQ9BUI4 534 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 TFIP11Q9UBB9 837 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 AKT3Q9Y243 479 aa12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 CDY2AQ9Y6F7 541 aa12.8□□□□□ -0.36
CCDC88C-212ENST00000556767 SCN5AQ14524 2016 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 TANC1Q9C0D5 1861 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 NBNO60934 754 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 LYPLA2O95372 231 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 PFKMP08237 780 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 SPATA31C1P0DKV0 1188 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 RPA1P27694 616 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 DNM2P50570 870 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 POTEGQ6S5H5 508 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 C16orf59Q7L2K0 433 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 OTOP2Q7RTS6 562 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 KIAA0319LQ8IZA0 1049 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 TDHQ8IZJ6 230 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 NME8Q8N427 588 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 ZNF579Q8NAF0 562 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 RASSF8Q8NHQ8 419 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 SLC7A3Q8WY07 619 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 CDK5RAP3Q96JB5 506 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 RNPC3Q96LT9 517 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 SCLT1Q96NL6 688 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 NACC1Q96RE7 527 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 JPH2Q9BR39 696 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 KIAA1024Q9UPX6 916 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 TRPV2Q9Y5S1 764 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 EVPLQ92817 2033 aa12.79□□□□□ -0.36
CCDC88C-212ENST00000556767 ZBBXA8MT70 800 aa12.78□□□□□ -0.36
CCDC88C-212ENST00000556767 CHRNA1P02708 482 aa12.78□□□□□ -0.36
CCDC88C-212ENST00000556767 VTNP04004 478 aa12.78□□□□□ -0.36
CCDC88C-212ENST00000556767 GHRP10912 638 aa12.78□□□□□ -0.36
CCDC88C-212ENST00000556767 ACTN1P12814 892 aa12.78□□□□□ -0.36
CCDC88C-212ENST00000556767 RFC5P40937 340 aa12.78□□□□□ -0.36
CCDC88C-212ENST00000556767 MBTPS1Q14703 1052 aa12.78□□□□□ -0.36
CCDC88C-212ENST00000556767 PTPAQ15257 358 aa12.78□□□□□ -0.36
CCDC88C-212ENST00000556767 FAM26DQ5JW98 314 aa12.78□□□□□ -0.36
CCDC88C-212ENST00000556767 TMEM240Q5SV17 173 aa12.78□□□□□ -0.36
CCDC88C-212ENST00000556767 TRAF7Q6Q0C0 670 aa12.78□□□□□ -0.36
CCDC88C-212ENST00000556767 RPAINQ86UA6 219 aa12.78□□□□□ -0.36
CCDC88C-212ENST00000556767 PLIN2Q99541 437 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms