RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 COG2Q14746 738 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 EPHA7Q15375 998 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 CERKLQ49MI3 558 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-213ENST00000552720 ZC2HC1CQ53FD0 456 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-213ENST00000552720 ALKBH5Q6P6C2 394 aaKnown RBP8.2□□□□□ -1.1
LIMA1-213ENST00000552720 ARHGAP27Q6ZUM4 889 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 SP8Q8IXZ3 490 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 SPICE1Q8N0Z3 855 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 METTL13Q8N6R0 699 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 LRRC57Q8N9N7 239 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 TEKT1Q969V4 418 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 SLC35C1Q96A29 364 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 LUC7LQ9NQ29 371 aaKnown RBP8.2□□□□□ -1.1
LIMA1-213ENST00000552720 GCNT4Q9P109 453 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 FAM198AQ9UFP1 575 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 TMEM59LQ9UK28 342 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 DNM3Q9UQ16 869 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 TRAF3IP3Q9Y228 551 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 BCS1LQ9Y276 419 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 PITPNM2Q9BZ72 1349 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 F5H6K3 240 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 CHMP2AO43633 222 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 GFPT2O94808 682 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 ZBTB48P10074 688 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-213ENST00000552720 FLT3P36888 993 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 LIG3P49916 1009 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 RBM5P52756 815 aaKnown RBP eCLIP8.2□□□□□ -1.1
LIMA1-213ENST00000552720 UBXN2AP68543 259 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 SKOR1P84550 965 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 KLRC3Q07444 240 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 FRMD5Q7Z6J6 570 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 SLFN12Q8IYM2 578 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 TAF4BQ92750 862 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 LRRC4CQ9HCJ2 640 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 RNF14Q9UBS8 474 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 VAV3Q9UKW4 847 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 PLAAQ9Y263 795 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 FAM169AQ9Y6X4 670 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 MYO3BQ8WXR4 1341 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 ZMYM2Q9UBW7 1377 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 DDX3XO00571 662 aaKnown RBP eCLIP8.19□□□□□ -1.1
LIMA1-213ENST00000552720 TGFB1I1O43294 461 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 SEC24CP53992 1094 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 ICA1Q05084 483 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 RRP1BQ14684 758 aaKnown RBP8.19□□□□□ -1.1
LIMA1-213ENST00000552720 NAA35Q5VZE5 725 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 MAATS1Q7Z4T9 603 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 TPCN2Q8NHX9 752 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 LNX1Q8TBB1 728 aaPredicted RBP8.19□□□□□ -1.1
LIMA1-213ENST00000552720 U2AF1L4Q8WU68 220 aaKnown RBP8.19□□□□□ -1.1
LIMA1-213ENST00000552720 SCFD2Q8WU76 684 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 CELF4Q9BZC1 486 aaKnown RBP8.19□□□□□ -1.1
LIMA1-213ENST00000552720 CENPHQ9H3R5 247 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 OSGEPQ9NPF4 335 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 PLCB1Q9NQ66 1216 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 NOC2LQ9Y3T9 749 aaKnown RBP8.19□□□□□ -1.1
LIMA1-213ENST00000552720 C10orf71Q711Q0 1435 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 IGSF9BQ9UPX0 1349 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 ZNF646O15015 1829 aaPredicted RBP8.19□□□□□ -1.1
LIMA1-213ENST00000552720 SPDYE3A6NKU9 549 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 G3V3G9 751 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 EBAG9O00559 213 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 PDXKO00764 312 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 SART1O43290 800 aaKnown RBP8.19□□□□□ -1.1
LIMA1-213ENST00000552720 NDUFB10O96000 172 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 HPDP32754 393 aaPredicted RBP8.19□□□□□ -1.1
LIMA1-213ENST00000552720 COPB2P35606 906 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 JAM2P57087 298 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 TNNC1P63316 161 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 UAP1Q16222 522 aaPredicted RBP8.19□□□□□ -1.1
LIMA1-213ENST00000552720 CEP85LQ5SZL2 805 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 DCAF8Q5TAQ9 597 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 GBP6Q6ZN66 633 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 FBXO11Q86XK2 927 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 MICALL1Q8N3F8 863 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 OLIG1Q8TAK6 271 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 EIF2AK1Q9BQI3 630 aaKnown RBP8.19□□□□□ -1.1
LIMA1-213ENST00000552720 AMNQ9BXJ7 453 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 TYW1Q9NV66 732 aaKnown RBP8.19□□□□□ -1.1
LIMA1-213ENST00000552720 AMACRQ9UHK6 382 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 NR2E1Q9Y466 385 aa8.19□□□□□ -1.1
LIMA1-213ENST00000552720 ZNFX1Q9P2E3 1918 aaKnown RBP8.19□□□□□ -1.1
LIMA1-213ENST00000552720 A0A1W2PRG0 241 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 SHTN1A0MZ66 631 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 KLRG2A4D1S0 409 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-213ENST00000552720 NDUFAB1O14561 156 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 CALUO43852 315 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-213ENST00000552720 LRRN2O75325 713 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 NR1D1P20393 614 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 HOXA7P31268 230 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-213ENST00000552720 SREBF1P36956 1147 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 HSD17B3P37058 310 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 AP3B2Q13367 1082 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 TTC31Q49AM3 519 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-213ENST00000552720 Q4G0T1 1027 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 RINT1Q6NUQ1 792 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 HHIPL2Q6UWX4 724 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 PEX26Q7Z412 305 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 ADAT2Q7Z6V5 191 aaKnown RBP8.18□□□□□ -1.1
LIMA1-213ENST00000552720 TADA2BQ86TJ2 420 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms