RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 TPCN2Q8NHX9 752 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 ACTRT1Q8TDG2 376 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 SETDB2Q96T68 719 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 JPH2Q9BR39 696 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-212ENST00000552491 RAB34Q9BZG1 259 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 IKZF4Q9H2S9 585 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 JMJD4Q9H9V9 463 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 EMILIN3Q9NT22 766 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 ANKIB1Q9P2G1 1089 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 GGA2Q9UJY4 613 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 STXBP5LQ9Y2K9 1186 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 NOC2LQ9Y3T9 749 aaKnown RBP5.92□□□□□ -1.46
LIMA1-212ENST00000552491 GOLGB1Q14789 3259 aaKnown RBP5.92□□□□□ -1.46
LIMA1-212ENST00000552491 GPR75-ASB3A0A0A6YYF3 556 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 BTNL10A8MVZ5 291 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 GCOM1H8Y6P7 765 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-212ENST00000552491 CES2O00748 559 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 TTI1O43156 1089 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 TRAPPC3O43617 180 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 MED24O75448 989 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 MYZAPP0CAP1 466 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 AKR1B1P15121 316 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 NR2F2P24468 414 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 PON1P27169 355 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 POLD1P28340 1107 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 CTNNA1P35221 906 aaKnown RBP5.92□□□□□ -1.46
LIMA1-212ENST00000552491 RFC4P35249 363 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 SLC16A2P36021 539 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 PSMC6P62333 389 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 POU5F1Q01860 360 aaKnown RBP5.92□□□□□ -1.46
LIMA1-212ENST00000552491 SEPT2Q15019 361 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 HYIQ5T013 277 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 ALKBH5Q6P6C2 394 aaKnown RBP5.92□□□□□ -1.46
LIMA1-212ENST00000552491 LRIG3Q6UXM1 1119 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 THSD4Q6ZMP0 1018 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 CCDC91Q7Z6B0 441 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 FAM228AQ86W67 206 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 GPBP1Q86WP2 473 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 RAPGEF5Q92565 580 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 TAF4BQ92750 862 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 ZKSCAN4Q969J2 545 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-212ENST00000552491 MYCBPQ99417 103 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-212ENST00000552491 P2RX7Q99572 595 aaKnown RBP5.92□□□□□ -1.46
LIMA1-212ENST00000552491 ZNF287Q9HBT7 754 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 SLC40A1Q9NP59 571 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 MTMR4Q9NYA4 1195 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 BCCIPQ9P287 314 aaKnown RBP eCLIP5.92□□□□□ -1.46
LIMA1-212ENST00000552491 HDAC9Q9UKV0 1011 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 PCDHA12Q9UN75 941 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 NOVA2Q9UNW9 492 aaKnown RBP5.92□□□□□ -1.46
LIMA1-212ENST00000552491 LEMD3Q9Y2U8 911 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 KIF13BQ9NQT8 1826 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 FRMD3A2A2Y4 597 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 GMNCA6NCL1 334 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 USP17L15C9J2P7 530 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 USP17L13C9JLJ4 530 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 USP17L11C9JVI0 530 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 USP17L18D6R9N7 530 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 USP17L22D6RA61 530 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 USP17L17D6RBQ6 530 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 USP17L19D6RCP7 530 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 USP17L20D6RJB6 530 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 KRIT1O00522 736 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 DDX3XO00571 662 aaKnown RBP eCLIP5.92□□□□□ -1.46
LIMA1-212ENST00000552491 AKAP3O75969 853 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 GNA14O95837 355 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 SNHG28P0DPA3 235 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 COPB2P35606 906 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 CASP4P49662 377 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 SMTNP53814 917 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 SLC12A3P55017 1021 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 DDR1Q08345 913 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 KCNA1Q09470 495 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 USP17L24Q0WX57 530 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 CUL1Q13616 776 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 COL24A1Q17RW2 1714 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 UBAP2Q5T6F2 1119 aaKnown RBP5.92□□□□□ -1.46
LIMA1-212ENST00000552491 USP17L6PQ6QN14 398 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 TMC3Q7Z5M5 1100 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 SLFN11Q7Z7L1 901 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 ADGRF4Q8IZF3 695 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 ARFGAP2Q8N6H7 521 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 MDM1Q8TC05 714 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 ATP8B4Q8TF62 1192 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 UBLCP1Q8WVY7 318 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-212ENST00000552491 PBKQ96KB5 322 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.92□□□□□ -1.46
LIMA1-212ENST00000552491 TRIM51Q9BSJ1 452 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 DPH5Q9H2P9 285 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 EPB41L4BQ9H329 900 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 ZHX3Q9H4I2 956 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 SIX2Q9NPC8 291 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 OSGEPQ9NPF4 335 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 KLC4Q9NSK0 619 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 NARFQ9UHQ1 456 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 IGSF9BQ9UPX0 1349 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 GOLGA6L10A6NI86 522 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 PHF20L1A8MW92 1017 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 TMCO5BA8MYB1 307 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 RSPH10B2B2RC85 870 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms