RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 FAM86B1E9PN63 330 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 C5orf67F2Z3F1 127 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 H3BQ06 376 aaPredicted RBP9.64□□□□□ -0.87
USP28-215ENST00000545608 hCG_1984214I3L0E3 225 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 GRM6O15303 877 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 DHX15O43143 795 aaKnown RBP9.64□□□□□ -0.87
USP28-215ENST00000545608 DGKIO75912 1065 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 RB1P06400 928 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 FAM86B2P0C5J1 330 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 CTNNB1P35222 781 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 ZNF76P36508 570 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 APOBRQ0VD83 1088 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 AP3B2Q13367 1082 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 KRT32Q14532 448 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 PFKFB3Q16875 520 aaPredicted RBP9.64□□□□□ -0.87
USP28-215ENST00000545608 TIGD5Q53EQ6 642 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 IER5Q5VY09 327 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 PTCRAQ6ISU1 281 aaPredicted RBP9.64□□□□□ -0.87
USP28-215ENST00000545608 POTEBQ6S5H4 581 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 MTHFD1LQ6UB35 978 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 ABHD15Q6UXT9 468 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 Q6ZUG5 572 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 PLA2G4DQ86XP0 818 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 TEX2Q8IWB9 1127 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 FAM178BQ8IXR5 827 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 CRIPAKQ8N1N5 446 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 ZNF713Q8N859 430 aaPredicted RBP9.64□□□□□ -0.87
USP28-215ENST00000545608 CRYGNQ8WXF5 182 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 KCNB2Q92953 911 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 LRFN3Q9BTN0 628 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 CELF4Q9BZC1 486 aaKnown RBP9.64□□□□□ -0.87
USP28-215ENST00000545608 NSUN3Q9H649 340 aaKnown RBP9.64□□□□□ -0.87
USP28-215ENST00000545608 PADI3Q9ULW8 664 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 TRPV2Q9Y5S1 764 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 SQORQ9Y6N5 450 aa9.64□□□□□ -0.87
USP28-215ENST00000545608 SIP14410 1827 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 ADGRA3Q8IWK6 1321 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 IGLV3-22A0A075B6J6 115 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 SMIM35A0A1B0GVV1 85 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 HBP1O60381 514 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 RPLP2P05387 115 aaKnown RBP9.63□□□□□ -0.87
USP28-215ENST00000545608 CYP3A4P08684 503 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 HMGB1P09429 215 aaKnown RBP9.63□□□□□ -0.87
USP28-215ENST00000545608 SCG2P13521 617 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 ATP4AP20648 1035 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 KLRC1P26715 233 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 METAP2P50579 478 aaKnown RBP eCLIP9.63□□□□□ -0.87
USP28-215ENST00000545608 FOSBP53539 338 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 RCAN1P53805 252 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 BTG3Q14201 252 aaPredicted RBP9.63□□□□□ -0.87
USP28-215ENST00000545608 COL19A1Q14993 1142 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 PKN1Q16512 942 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 EP400NLQ6ZTU2 488 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 NIPA1Q7RTP0 329 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 CCDC60Q8IWA6 550 aaPredicted RBP9.63□□□□□ -0.87
USP28-215ENST00000545608 NME8Q8N427 588 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 TNPO1Q92973 898 aaKnown RBP9.63□□□□□ -0.87
USP28-215ENST00000545608 CLP1Q92989 425 aaKnown RBP9.63□□□□□ -0.87
USP28-215ENST00000545608 PABPC5Q96DU9 382 aaKnown RBP9.63□□□□□ -0.87
USP28-215ENST00000545608 REPIN1Q9BWE0 567 aaKnown RBP9.63□□□□□ -0.87
USP28-215ENST00000545608 GLT8D2Q9H1C3 349 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 TMX1Q9H3N1 280 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 C11orf16Q9NQ32 467 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 SNX14Q9Y5W7 946 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 COL4A6Q14031 1691 aa9.63□□□□□ -0.87
USP28-215ENST00000545608 IGSF9BQ9UPX0 1349 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 KDM3AQ9Y4C1 1321 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 MYO7AQ13402 2215 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 ESYT2A0FGR8 921 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 PI4K2BG5E9Z4 385 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 M0QZ92 97 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 BACH1O14867 736 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 PPFIA3O75145 1194 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 HSPA4P34932 840 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 LTBRP36941 435 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 GATMP50440 423 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 SLC26A2P50443 739 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 FGD1P98174 961 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 KRT76Q01546 638 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 PAK2Q13177 524 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 CAMK1Q14012 370 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 TMEM266Q2M3C6 531 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 FAM160B1Q5W0V3 765 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 SWSAP1Q6NVH7 229 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 PDXDC2PQ6P474 469 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 POTEHQ6S545 545 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 NPAS4Q8IUM7 802 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 KIAA0319LQ8IZA0 1049 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 GJD3Q8N144 294 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 ATP8B4Q8TF62 1192 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 BRF1Q92994 677 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 JAKMIP1Q96N16 626 aaKnown RBP9.62□□□□□ -0.87
USP28-215ENST00000545608 C11orf84Q9BUA3 381 aaPredicted RBP9.62□□□□□ -0.87
USP28-215ENST00000545608 TMUB1Q9BVT8 246 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 FTHL17Q9BXU8 183 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 ZMYND12Q9H0C1 365 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 LMAN2LQ9H0V9 348 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 ALG13Q9NP73 1137 aaKnown RBP9.62□□□□□ -0.87
USP28-215ENST00000545608 ZNF302Q9NR11 478 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 CLDND1Q9NY35 253 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms