RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 KCND2Q9NZV8 630 aa15.8■□□□□ 0.12
VPS33A-209ENST00000544349 EFCAB8A8MWE9 144 aa15.8■□□□□ 0.12
VPS33A-209ENST00000544349 TBCAO75347 108 aaKnown RBP15.8■□□□□ 0.12
VPS33A-209ENST00000544349 EIF3JO75822 258 aaKnown RBP15.8■□□□□ 0.12
VPS33A-209ENST00000544349 YY1P25490 414 aa15.8■□□□□ 0.12
VPS33A-209ENST00000544349 FSTL1Q12841 308 aa15.8■□□□□ 0.12
VPS33A-209ENST00000544349 C2orf69Q8N8R5 385 aa15.8■□□□□ 0.12
VPS33A-209ENST00000544349 FAM133AQ8N9E0 248 aa15.8■□□□□ 0.12
VPS33A-209ENST00000544349 RDM1Q8NG50 284 aa15.8■□□□□ 0.12
VPS33A-209ENST00000544349 SCFD1Q8WVM8 642 aa15.8■□□□□ 0.12
VPS33A-209ENST00000544349 MS4A4AQ96JQ5 239 aa15.8■□□□□ 0.12
VPS33A-209ENST00000544349 TSG101Q99816 390 aa15.8■□□□□ 0.12
VPS33A-209ENST00000544349 ST7Q9NRC1 585 aa15.8■□□□□ 0.12
VPS33A-209ENST00000544349 PNMA3Q9UL41 463 aa15.8■□□□□ 0.12
VPS33A-209ENST00000544349 COL4A3BPQ9Y5P4 624 aa15.8■□□□□ 0.12
VPS33A-209ENST00000544349 NFASCO94856 1347 aa15.8■□□□□ 0.12
VPS33A-209ENST00000544349 SOWAHBA6NEL2 793 aa15.79■□□□□ 0.12
VPS33A-209ENST00000544349 LGALS16A8MUM7 142 aa15.79■□□□□ 0.12
VPS33A-209ENST00000544349 NKRFO15226 690 aaKnown RBP eCLIP15.79■□□□□ 0.12
VPS33A-209ENST00000544349 CELF2O95319 508 aaKnown RBP15.79■□□□□ 0.12
VPS33A-209ENST00000544349 TFRCP02786 760 aaKnown RBP15.79■□□□□ 0.12
VPS33A-209ENST00000544349 CETPP11597 493 aa15.79■□□□□ 0.12
VPS33A-209ENST00000544349 ZCWPW2Q504Y3 356 aa15.79■□□□□ 0.12
VPS33A-209ENST00000544349 CNOT6LQ96LI5 555 aaKnown RBP15.79■□□□□ 0.12
VPS33A-209ENST00000544349 POLD4Q9HCU8 107 aa15.79■□□□□ 0.12
VPS33A-209ENST00000544349 DBR1Q9UK59 544 aaKnown RBP15.79■□□□□ 0.12
VPS33A-209ENST00000544349 ARHGEF35A5YM69 484 aa15.79■□□□□ 0.12
VPS33A-209ENST00000544349 FGFR1OPO95684 399 aaKnown RBP15.79■□□□□ 0.12
VPS33A-209ENST00000544349 GAP43P17677 238 aa15.79■□□□□ 0.12
VPS33A-209ENST00000544349 EDNRBP24530 442 aa15.79■□□□□ 0.12
VPS33A-209ENST00000544349 ICAM3P32942 547 aa15.79■□□□□ 0.12
VPS33A-209ENST00000544349 ARHGAP25P42331 645 aa15.79■□□□□ 0.12
VPS33A-209ENST00000544349 GTF2A2P52657 109 aa15.79■□□□□ 0.12
VPS33A-209ENST00000544349 PSMC5P62195 406 aa15.79■□□□□ 0.12
VPS33A-209ENST00000544349 TEX35Q5T0J7 233 aa15.79■□□□□ 0.12
VPS33A-209ENST00000544349 C4orf19Q8IY42 314 aa15.79■□□□□ 0.12
VPS33A-209ENST00000544349 ZNF507Q8TCN5 953 aa15.79■□□□□ 0.12
VPS33A-209ENST00000544349 FHOD1Q9Y613 1164 aa15.79■□□□□ 0.12
VPS33A-209ENST00000544349 DOCK5Q9H7D0 1870 aa15.79■□□□□ 0.12
VPS33A-209ENST00000544349 WDR81Q562E7 1941 aa15.78■□□□□ 0.12
VPS33A-209ENST00000544349 TTC26A0AVF1 554 aa15.78■□□□□ 0.12
VPS33A-209ENST00000544349 SEC31AO94979 1220 aaKnown RBP15.78■□□□□ 0.12
VPS33A-209ENST00000544349 FAM13AO94988 1023 aa15.78■□□□□ 0.12
VPS33A-209ENST00000544349 CYP2C8P10632 490 aa15.78■□□□□ 0.12
VPS33A-209ENST00000544349 GUCY2CP25092 1073 aa15.78■□□□□ 0.12
VPS33A-209ENST00000544349 KRT9P35527 623 aa15.78■□□□□ 0.12
VPS33A-209ENST00000544349 CASP5P51878 434 aa15.78■□□□□ 0.12
VPS33A-209ENST00000544349 UGCGQ16739 394 aa15.78■□□□□ 0.12
VPS33A-209ENST00000544349 RSRC2Q7L4I2 434 aaKnown RBP15.78■□□□□ 0.12
VPS33A-209ENST00000544349 EPM2AIP1Q7L775 607 aaPredicted RBP15.78■□□□□ 0.12
VPS33A-209ENST00000544349 GTF3C2Q8WUA4 911 aaPredicted RBP15.78■□□□□ 0.12
VPS33A-209ENST00000544349 CHP1Q99653 195 aa15.78■□□□□ 0.12
VPS33A-209ENST00000544349 TUBGCP2Q9BSJ2 902 aa15.78■□□□□ 0.12
VPS33A-209ENST00000544349 KCTD10Q9H3F6 313 aa15.78■□□□□ 0.12
VPS33A-209ENST00000544349 BCAS3Q9H6U6 928 aa15.78■□□□□ 0.12
VPS33A-209ENST00000544349 OLFML3Q9NRN5 406 aa15.78■□□□□ 0.12
VPS33A-209ENST00000544349 PRDM4Q9UKN5 801 aa15.78■□□□□ 0.12
VPS33A-209ENST00000544349 ODF2LQ9ULJ1 636 aa15.78■□□□□ 0.12
VPS33A-209ENST00000544349 SLC45A1Q9Y2W3 748 aa15.78■□□□□ 0.12
VPS33A-209ENST00000544349 REXO2Q9Y3B8 237 aaKnown RBP15.78■□□□□ 0.12
VPS33A-209ENST00000544349 PCDHA10Q9Y5I2 948 aa15.78■□□□□ 0.12
VPS33A-209ENST00000544349 CCL15-CCL14A0A0B4J2E2 113 aa15.77■□□□□ 0.12
VPS33A-209ENST00000544349 SFI1A8K8P3 1242 aa15.77■□□□□ 0.12
VPS33A-209ENST00000544349 TPM1P09493 284 aa15.77■□□□□ 0.12
VPS33A-209ENST00000544349 YWHABP31946 246 aaKnown RBP15.77■□□□□ 0.12
VPS33A-209ENST00000544349 ERVK-9P63128 1117 aa15.77■□□□□ 0.12
VPS33A-209ENST00000544349 TRIM14Q14142 442 aa15.77■□□□□ 0.12
VPS33A-209ENST00000544349 CCL15Q16663 113 aa15.77■□□□□ 0.12
VPS33A-209ENST00000544349 LRRC55Q6ZSA7 311 aa15.77■□□□□ 0.12
VPS33A-209ENST00000544349 NELFCDQ8IXH7 590 aa15.77■□□□□ 0.12
VPS33A-209ENST00000544349 KRT222Q8N1A0 295 aa15.77■□□□□ 0.12
VPS33A-209ENST00000544349 MROH8Q9H579 483 aa15.77■□□□□ 0.12
VPS33A-209ENST00000544349 JPH1Q9HDC5 661 aaPredicted RBP15.77■□□□□ 0.12
VPS33A-209ENST00000544349 NMRK2Q9NPI5 230 aa15.77■□□□□ 0.12
VPS33A-209ENST00000544349 SLC9A2Q9UBY0 812 aa15.77■□□□□ 0.12
VPS33A-209ENST00000544349 B4DLN1 442 aa15.77■□□□□ 0.11
VPS33A-209ENST00000544349 BTBD19C9JJ37 291 aa15.77■□□□□ 0.11
VPS33A-209ENST00000544349 PES1O00541 588 aaKnown RBP15.77■□□□□ 0.11
VPS33A-209ENST00000544349 RARRES1P49788 294 aa15.77■□□□□ 0.11
VPS33A-209ENST00000544349 KLK7P49862 253 aa15.77■□□□□ 0.11
VPS33A-209ENST00000544349 ZNF131P52739 623 aa15.77■□□□□ 0.11
VPS33A-209ENST00000544349 FKBP3Q00688 224 aaKnown RBP15.77■□□□□ 0.11
VPS33A-209ENST00000544349 SP2Q02086 613 aa15.77■□□□□ 0.11
VPS33A-209ENST00000544349 MKRN3Q13064 507 aaKnown RBP15.77■□□□□ 0.11
VPS33A-209ENST00000544349 ZNF569Q5MCW4 686 aa15.77■□□□□ 0.11
VPS33A-209ENST00000544349 PADI6Q6TGC4 694 aa15.77■□□□□ 0.11
VPS33A-209ENST00000544349 TMTC1Q8IUR5 882 aa15.77■□□□□ 0.11
VPS33A-209ENST00000544349 SLC35F6Q8N357 371 aa15.77■□□□□ 0.11
VPS33A-209ENST00000544349 MYCT1Q8N699 235 aa15.77■□□□□ 0.11
VPS33A-209ENST00000544349 PARVGQ9HBI0 331 aa15.77■□□□□ 0.11
VPS33A-209ENST00000544349 MYH11P35749 1972 aa15.76■□□□□ 0.11
VPS33A-209ENST00000544349 PDHXO00330 501 aa15.76■□□□□ 0.11
VPS33A-209ENST00000544349 ZRANB2O95218 330 aaKnown RBP eCLIP15.76■□□□□ 0.11
VPS33A-209ENST00000544349 MYBP10242 640 aa15.76■□□□□ 0.11
VPS33A-209ENST00000544349 KCTD2Q14681 263 aa15.76■□□□□ 0.11
VPS33A-209ENST00000544349 CYP26C1Q6V0L0 522 aa15.76■□□□□ 0.11
VPS33A-209ENST00000544349 SEPT14Q6ZU15 432 aa15.76■□□□□ 0.11
VPS33A-209ENST00000544349 SHCBP1Q8NEM2 672 aa15.76■□□□□ 0.11
VPS33A-209ENST00000544349 BRI3BPQ8WY22 251 aa15.76■□□□□ 0.11
VPS33A-209ENST00000544349 MMP19Q99542 508 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms