RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 ARFGAP3Q9NP61 516 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 SLC8A2Q9UPR5 921 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 TTLL3Q9Y4R7 772 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 SNTNA6NMZ2 147 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.6□□□□□ -0.87
VPS13D-212ENST00000543766 PLSCR1O15162 318 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 ALDH1L1O75891 902 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 TGDSO95455 350 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 DDX58O95786 925 aaKnown RBP9.6□□□□□ -0.87
VPS13D-212ENST00000543766 APEHP13798 732 aaKnown RBP9.6□□□□□ -0.87
VPS13D-212ENST00000543766 PRKAR2AP13861 404 aaKnown RBP9.6□□□□□ -0.87
VPS13D-212ENST00000543766 GFAPP14136 432 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 KCNJ6P48051 423 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 BEND6Q5SZJ8 279 aaPredicted RBP9.6□□□□□ -0.87
VPS13D-212ENST00000543766 NPAS4Q8IUM7 802 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 CCDC83Q8IWF9 413 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 TBC1D21Q8IYX1 336 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.6□□□□□ -0.87
VPS13D-212ENST00000543766 NDNQ99608 321 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 TEKT2Q9UIF3 430 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 ATP6V1DQ9Y5K8 247 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 MACROD2A1Z1Q3 448 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 WDR46O15213 610 aaKnown RBP9.6□□□□□ -0.87
VPS13D-212ENST00000543766 THAP12O43422 761 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 ATP9AO75110 1047 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 MAP3K6O95382 1288 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 TFPTP0C1Z6 253 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 DDR1Q08345 913 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 LPCAT2Q7L5N7 544 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 ZNF354CQ86Y25 554 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 CNNM3Q8NE01 707 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 SLC16A10Q8TF71 515 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 CCDC42Q96M95 316 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 MOGAT1Q96PD6 335 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 TUBA1CQ9BQE3 449 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 CALN1Q9BXU9 219 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 NUF2Q9BZD4 464 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 FAM8A1Q9UBU6 413 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 SLC30A1Q9Y6M5 507 aa9.6□□□□□ -0.87
VPS13D-212ENST00000543766 CASQ2O14958 399 aaPredicted RBP9.59□□□□□ -0.87
VPS13D-212ENST00000543766 MYZAPP0CAP1 466 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 PPA1Q15181 289 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 FAM209AQ5JX71 171 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 AGR3Q8TD06 166 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 A2ML1A8K2U0 1454 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 GAKO14976 1311 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 VWA5AO00534 786 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 PRLP01236 227 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 L1CAMP32004 1257 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 TYRO3Q06418 890 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 CCDC38Q502W7 563 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 C6orf132Q5T0Z8 1188 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 SEPT8Q92599 483 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 NMD3Q96D46 503 aaKnown RBP9.59□□□□□ -0.87
VPS13D-212ENST00000543766 PRAM1Q96QH2 718 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 OSBPL3Q9H4L5 887 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 SCPEP1Q9HB40 452 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 SNRKQ9NRH2 765 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 ZIM2Q9NZV7 527 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 SAMM50Q9Y512 469 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 MAP2K7O14733 419 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 ATP4AP20648 1035 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 POLR2BP30876 1174 aaKnown RBP9.59□□□□□ -0.87
VPS13D-212ENST00000543766 AARSP49588 968 aaKnown RBP eCLIP9.59□□□□□ -0.87
VPS13D-212ENST00000543766 CSNK2BP67870 215 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 SWSAP1Q6NVH7 229 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 CDK12Q9NYV4 1490 aaPredicted RBP9.59□□□□□ -0.87
VPS13D-212ENST00000543766 NSD3Q9BZ95 1437 aa9.59□□□□□ -0.87
VPS13D-212ENST00000543766 ASAP2O43150 1006 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 STX6O43752 255 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 PRPF6O94906 941 aaKnown RBP9.58□□□□□ -0.88
VPS13D-212ENST00000543766 GRK2P25098 689 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 CYB5D1Q6P9G0 228 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 CRTC1Q6UUV9 634 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 LRRTM3Q86VH5 581 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 HAUS1Q96CS2 278 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 COG3Q96JB2 828 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 OSBPL1AQ9BXW6 950 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 PA2G4Q9UQ80 394 aaKnown RBP9.58□□□□□ -0.88
VPS13D-212ENST00000543766 RBMX2Q9Y388 322 aaKnown RBP9.58□□□□□ -0.88
VPS13D-212ENST00000543766 TUBB4AP04350 444 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 NEK4P51957 841 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 PLD1Q13393 1074 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 PUM3Q15397 648 aaKnown RBP9.58□□□□□ -0.88
VPS13D-212ENST00000543766 ANKRD20A8PQ5CZ79 823 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 ANKRD20A2Q5SQ80 823 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 ANKRD20A3Q5VUR7 823 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 FBXO31Q5XUX0 539 aaPredicted RBP9.58□□□□□ -0.88
VPS13D-212ENST00000543766 CCDC129Q6ZRS4 1044 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 CCDC116Q8IYX3 515 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 AADATQ8N5Z0 425 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 STK32AQ8WU08 396 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 FUT8Q9BYC5 575 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 VCX3AQ9NNX9 186 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 TRPS1Q9UHF7 1281 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 PI4K2BG5E9Z4 385 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 RIPK2O43353 540 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 BAG2O95816 211 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 RENBPP51606 427 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 LAPTM5Q13571 262 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms