RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 CEP131Q9UPN4 1083 aa13.94□□□□□ -0.18
VPS33A-207ENST00000542790 SCN10AQ9Y5Y9 1956 aa13.93□□□□□ -0.18
VPS33A-207ENST00000542790 LAD1O00515 517 aa13.93□□□□□ -0.18
VPS33A-207ENST00000542790 OATP04181 439 aa13.93□□□□□ -0.18
VPS33A-207ENST00000542790 P4HBP07237 508 aaKnown RBP13.93□□□□□ -0.18
VPS33A-207ENST00000542790 OR52Z1P0C646 297 aa13.93□□□□□ -0.18
VPS33A-207ENST00000542790 QARSP47897 775 aaKnown RBP13.93□□□□□ -0.18
VPS33A-207ENST00000542790 PSMC5P62195 406 aa13.93□□□□□ -0.18
VPS33A-207ENST00000542790 PRKCEQ02156 737 aa13.93□□□□□ -0.18
VPS33A-207ENST00000542790 SPIRE1Q08AE8 756 aa13.93□□□□□ -0.18
VPS33A-207ENST00000542790 TRIM71Q2Q1W2 868 aaKnown RBP13.93□□□□□ -0.18
VPS33A-207ENST00000542790 XKR3Q5GH77 459 aa13.93□□□□□ -0.18
VPS33A-207ENST00000542790 LRRC8DQ7L1W4 858 aa13.93□□□□□ -0.18
VPS33A-207ENST00000542790 TRMT1LQ7Z2T5 733 aaKnown RBP13.93□□□□□ -0.18
VPS33A-207ENST00000542790 RSPH3Q86UC2 560 aa13.93□□□□□ -0.18
VPS33A-207ENST00000542790 PCDHB6Q9Y5E3 794 aa13.93□□□□□ -0.18
VPS33A-207ENST00000542790 COL1A2P08123 1366 aa13.93□□□□□ -0.18
VPS33A-207ENST00000542790 TNRC18O15417 2968 aaPredicted RBP13.92□□□□□ -0.18
VPS33A-207ENST00000542790 STX6O43752 255 aa13.92□□□□□ -0.18
VPS33A-207ENST00000542790 ZNF862O60290 1169 aa13.92□□□□□ -0.18
VPS33A-207ENST00000542790 PFKMP08237 780 aa13.92□□□□□ -0.18
VPS33A-207ENST00000542790 PTGDRQ13258 359 aa13.92□□□□□ -0.18
VPS33A-207ENST00000542790 NBR1Q14596 966 aa13.92□□□□□ -0.18
VPS33A-207ENST00000542790 UGCGQ16739 394 aa13.92□□□□□ -0.18
VPS33A-207ENST00000542790 TMEM266Q2M3C6 531 aa13.92□□□□□ -0.18
VPS33A-207ENST00000542790 VARS2Q5ST30 1063 aaKnown RBP13.92□□□□□ -0.18
VPS33A-207ENST00000542790 PSRC1Q6PGN9 363 aaPredicted RBP13.92□□□□□ -0.18
VPS33A-207ENST00000542790 MTHFD1LQ6UB35 978 aa13.92□□□□□ -0.18
VPS33A-207ENST00000542790 RPAINQ86UA6 219 aa13.92□□□□□ -0.18
VPS33A-207ENST00000542790 TDHQ8IZJ6 230 aa13.92□□□□□ -0.18
VPS33A-207ENST00000542790 C4orf32Q8N8J7 132 aa13.92□□□□□ -0.18
VPS33A-207ENST00000542790 BANK1Q8NDB2 785 aa13.92□□□□□ -0.18
VPS33A-207ENST00000542790 WNT8BQ93098 351 aa13.92□□□□□ -0.18
VPS33A-207ENST00000542790 DDX27Q96GQ7 796 aaKnown RBP13.92□□□□□ -0.18
VPS33A-207ENST00000542790 SCLYQ96I15 445 aa13.92□□□□□ -0.18
VPS33A-207ENST00000542790 IL23AQ9NPF7 189 aa13.92□□□□□ -0.18
VPS33A-207ENST00000542790 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.92□□□□□ -0.18
VPS33A-207ENST00000542790 PCDHA2Q9Y5H9 948 aa13.92□□□□□ -0.18
VPS33A-207ENST00000542790 RSPH10B2B2RC85 870 aa13.91□□□□□ -0.18
VPS33A-207ENST00000542790 ZBTB42B2RXF5 422 aa13.91□□□□□ -0.18
VPS33A-207ENST00000542790 MAGEB2O15479 319 aa13.91□□□□□ -0.18
VPS33A-207ENST00000542790 RSPH10BP0C881 870 aa13.91□□□□□ -0.18
VPS33A-207ENST00000542790 KLRC1P26715 233 aa13.91□□□□□ -0.18
VPS33A-207ENST00000542790 TECP42680 631 aa13.91□□□□□ -0.18
VPS33A-207ENST00000542790 EPHB4P54760 987 aa13.91□□□□□ -0.18
VPS33A-207ENST00000542790 ZNF618Q5T7W0 954 aa13.91□□□□□ -0.18
VPS33A-207ENST00000542790 RUFY4Q6ZNE9 571 aa13.91□□□□□ -0.18
VPS33A-207ENST00000542790 C16orf59Q7L2K0 433 aa13.91□□□□□ -0.18
VPS33A-207ENST00000542790 FERMT3Q86UX7 667 aa13.91□□□□□ -0.18
VPS33A-207ENST00000542790 NEK9Q8TD19 979 aa13.91□□□□□ -0.18
VPS33A-207ENST00000542790 TRAPPC12Q8WVT3 735 aa13.91□□□□□ -0.18
VPS33A-207ENST00000542790 HSD17B14Q9BPX1 270 aa13.91□□□□□ -0.18
VPS33A-207ENST00000542790 NIFKQ9BYG3 293 aaKnown RBP13.91□□□□□ -0.18
VPS33A-207ENST00000542790 ZSWIM4Q9H7M6 989 aa13.91□□□□□ -0.18
VPS33A-207ENST00000542790 MTMR6Q9Y217 621 aa13.91□□□□□ -0.18
VPS33A-207ENST00000542790 ALPK3Q96L96 1907 aa13.91□□□□□ -0.18
VPS33A-207ENST00000542790 PDE4DIPQ5VU43 2346 aa13.91□□□□□ -0.18
VPS33A-207ENST00000542790 MYH7BA7E2Y1 1941 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 SMIM35A0A1B0GVV1 85 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 DDX11L8A8MPP1 907 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 SLITRK3O94933 977 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 FGBP02675 491 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 ACRP10323 421 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 PRPHP41219 470 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 BECN1Q14457 450 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 PDIA5Q14554 519 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 SHHQ15465 462 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 DTHD1Q6ZMT9 781 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 ZNF365Q70YC5 407 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 OTUD6AQ7L8S5 288 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 TPH2Q8IWU9 490 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 C4orf19Q8IY42 314 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 NME8Q8N427 588 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 ERMNQ8TAM6 284 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 DNAJB3Q8WWF6 145 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 DYDC2Q96IM9 177 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 EIF2AK1Q9BQI3 630 aaKnown RBP13.9□□□□□ -0.18
VPS33A-207ENST00000542790 LXNQ9BS40 222 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 RAB34Q9BZG1 259 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 FAM49AQ9H0Q0 323 aaPredicted RBP13.9□□□□□ -0.18
VPS33A-207ENST00000542790 ZSCAN16Q9H4T2 348 aaPredicted RBP13.9□□□□□ -0.18
VPS33A-207ENST00000542790 RGL1Q9NZL6 768 aa13.9□□□□□ -0.18
VPS33A-207ENST00000542790 SEPT9Q9UHD8 586 aaPredicted RBP13.9□□□□□ -0.18
VPS33A-207ENST00000542790 STBD1O95210 358 aa13.89□□□□□ -0.19
VPS33A-207ENST00000542790 C22orf31O95567 290 aa13.89□□□□□ -0.19
VPS33A-207ENST00000542790 BMP15O95972 392 aa13.89□□□□□ -0.19
VPS33A-207ENST00000542790 CTSHP09668 335 aa13.89□□□□□ -0.19
VPS33A-207ENST00000542790 ACTN1P12814 892 aa13.89□□□□□ -0.19
VPS33A-207ENST00000542790 CYP4A11Q02928 519 aa13.89□□□□□ -0.19
VPS33A-207ENST00000542790 TBC1D8BQ0IIM8 1120 aa13.89□□□□□ -0.19
VPS33A-207ENST00000542790 CTTNQ14247 550 aaKnown RBP13.89□□□□□ -0.19
VPS33A-207ENST00000542790 HABP4Q5JVS0 413 aaKnown RBP13.89□□□□□ -0.19
VPS33A-207ENST00000542790 FAM26DQ5JW98 314 aa13.89□□□□□ -0.19
VPS33A-207ENST00000542790 TMEM240Q5SV17 173 aa13.89□□□□□ -0.19
VPS33A-207ENST00000542790 IER5Q5VY09 327 aa13.89□□□□□ -0.19
VPS33A-207ENST00000542790 TRAF7Q6Q0C0 670 aa13.89□□□□□ -0.19
VPS33A-207ENST00000542790 ANO5Q75V66 913 aa13.89□□□□□ -0.19
VPS33A-207ENST00000542790 DEFB128Q7Z7B8 93 aa13.89□□□□□ -0.19
VPS33A-207ENST00000542790 ZBTB10Q96DT7 871 aa13.89□□□□□ -0.19
VPS33A-207ENST00000542790 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms