RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 GLI1P08151 1106 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 FAM153BP0C7A2 387 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 FAM153CQ494X1 144 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 NSMFQ6X4W1 530 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 PALB2Q86YC2 1186 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 GLYCTKQ8IVS8 523 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 EHBP1Q8NDI1 1231 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 GMCL1Q96IK5 515 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 LXNQ9BS40 222 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 UBXN6Q9BZV1 441 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 GANQ9H2C0 597 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 FAM153AQ9UHL3 310 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 SERPING1P05155 500 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 ITGB5P18084 799 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 PPP1R2P41236 205 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 NT5C2P49902 561 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 GUCY2DQ02846 1103 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 FIGNQ5HY92 759 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 RSBN1LQ6PCB5 846 aaPredicted RBP18.52■□□□□ 0.56
USP28-208ENST00000540438 FAM178BQ8IXR5 827 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 OSGEPQ9NPF4 335 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 NFU1Q9UMS0 254 aa18.52■□□□□ 0.56
USP28-208ENST00000540438 CYP3A7-CYP3A51PA0A087WV96 503 aa18.52■□□□□ 0.55
USP28-208ENST00000540438 CYP3A7P24462 503 aa18.52■□□□□ 0.55
USP28-208ENST00000540438 CARSP49589 748 aaKnown RBP18.52■□□□□ 0.55
USP28-208ENST00000540438 NPEPPSP55786 919 aa18.52■□□□□ 0.55
USP28-208ENST00000540438 ORC2Q13416 577 aaPredicted RBP18.52■□□□□ 0.55
USP28-208ENST00000540438 MUM1L1Q5H9M0 696 aa18.52■□□□□ 0.55
USP28-208ENST00000540438 PLA2G4FQ68DD2 849 aa18.52■□□□□ 0.55
USP28-208ENST00000540438 PHLDB2Q86SQ0 1253 aa18.52■□□□□ 0.55
USP28-208ENST00000540438 IPO5O00410 1097 aaKnown RBP18.51■□□□□ 0.55
USP28-208ENST00000540438 KIF20AO95235 890 aa18.51■□□□□ 0.55
USP28-208ENST00000540438 PRPF4BQ13523 1007 aaKnown RBP18.51■□□□□ 0.55
USP28-208ENST00000540438 HYIQ5T013 277 aa18.51■□□□□ 0.55
USP28-208ENST00000540438 TSEN2Q8NCE0 465 aaKnown RBP18.51■□□□□ 0.55
USP28-208ENST00000540438 GMCL1P1Q8NEA9 526 aa18.51■□□□□ 0.55
USP28-208ENST00000540438 SLC35C1Q96A29 364 aa18.51■□□□□ 0.55
USP28-208ENST00000540438 TRIM31Q9BZY9 425 aa18.51■□□□□ 0.55
USP28-208ENST00000540438 CENPHQ9H3R5 247 aa18.51■□□□□ 0.55
USP28-208ENST00000540438 CEP55Q53EZ4 464 aa18.51■□□□□ 0.55
USP28-208ENST00000540438 IQCEQ6IPM2 695 aa18.51■□□□□ 0.55
USP28-208ENST00000540438 CCNI2Q6ZMN8 369 aaPredicted RBP18.51■□□□□ 0.55
USP28-208ENST00000540438 FAM186BQ8IYM0 893 aa18.51■□□□□ 0.55
USP28-208ENST00000540438 EPB41L5Q9HCM4 733 aa18.51■□□□□ 0.55
USP28-208ENST00000540438 GJA3Q9Y6H8 435 aa18.51■□□□□ 0.55
USP28-208ENST00000540438 LTBP1Q14766 1721 aa18.51■□□□□ 0.55
USP28-208ENST00000540438 HNRNPH3P31942 346 aaKnown RBP18.5■□□□□ 0.55
USP28-208ENST00000540438 Q4G0T1 1027 aa18.5■□□□□ 0.55
USP28-208ENST00000540438 HSD17B14Q9BPX1 270 aa18.5■□□□□ 0.55
USP28-208ENST00000540438 TAS2R14Q9NYV8 317 aa18.5■□□□□ 0.55
USP28-208ENST00000540438 HPCAL4Q9UM19 191 aa18.5■□□□□ 0.55
USP28-208ENST00000540438 TMEM110-MUSTN1A8MSY1 372 aa18.5■□□□□ 0.55
USP28-208ENST00000540438 CEP104O60308 925 aa18.5■□□□□ 0.55
USP28-208ENST00000540438 SYF2O95926 243 aaKnown RBP18.5■□□□□ 0.55
USP28-208ENST00000540438 PAFAH1B1P43034 410 aa18.5■□□□□ 0.55
USP28-208ENST00000540438 CKAP4Q07065 602 aaKnown RBP18.5■□□□□ 0.55
USP28-208ENST00000540438 SLC18A3Q16572 532 aa18.5■□□□□ 0.55
USP28-208ENST00000540438 C8orf74Q6P047 294 aa18.5■□□□□ 0.55
USP28-208ENST00000540438 ALKBH5Q6P6C2 394 aaKnown RBP18.5■□□□□ 0.55
USP28-208ENST00000540438 IRF2BP2Q7Z5L9 587 aa18.5■□□□□ 0.55
USP28-208ENST00000540438 SH2D3CQ8N5H7 860 aa18.5■□□□□ 0.55
USP28-208ENST00000540438 TTLL6Q8N841 843 aa18.5■□□□□ 0.55
USP28-208ENST00000540438 KAT5Q92993 513 aa18.5■□□□□ 0.55
USP28-208ENST00000540438 SIPA1L1O43166 1804 aa18.5■□□□□ 0.55
USP28-208ENST00000540438 GRID2IPA4D2P6 1211 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 CLSTN1O94985 981 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 EPB41P11171 864 aaKnown RBP18.49■□□□□ 0.55
USP28-208ENST00000540438 RASA3Q14644 834 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 TAF3Q5VWG9 929 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 TSGA10Q9BZW7 698 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 TMX2Q9Y320 296 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 WNT10BO00744 389 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 EXOC3O60645 756 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 HIP1RO75146 1068 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 CXCL9Q07325 125 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 STYK1Q6J9G0 422 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 CEP63Q96MT8 703 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 POP1Q99575 1024 aaKnown RBP18.49■□□□□ 0.55
USP28-208ENST00000540438 MYO3BQ8WXR4 1341 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 CNTNAP1P78357 1384 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 TESPA1A2RU30 521 aaPredicted RBP18.49■□□□□ 0.55
USP28-208ENST00000540438 POTEB2H3BUK9 544 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 ATP9AO75110 1047 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 PSMD10O75832 226 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 EYA4O95677 639 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 RXRBP28702 533 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 COBLL1Q53SF7 1204 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 AADACL2Q6P093 401 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 CCDC127Q96BQ5 260 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 FAM20AQ96MK3 541 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 GOPCQ9HD26 462 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 NRXN2Q9P2S2 1712 aa18.49■□□□□ 0.55
USP28-208ENST00000540438 K7ENM7 598 aa18.48■□□□□ 0.55
USP28-208ENST00000540438 FLOT1O75955 427 aa18.48■□□□□ 0.55
USP28-208ENST00000540438 SSTR3P32745 418 aaPredicted RBP18.48■□□□□ 0.55
USP28-208ENST00000540438 GCLMP48507 274 aa18.48■□□□□ 0.55
USP28-208ENST00000540438 SF3A3Q12874 501 aaKnown RBP eCLIP18.48■□□□□ 0.55
USP28-208ENST00000540438 C1orf186Q6ZWK4 172 aa18.48■□□□□ 0.55
USP28-208ENST00000540438 HNRNPLLQ8WVV9 542 aaKnown RBP18.48■□□□□ 0.55
USP28-208ENST00000540438 CBWD1Q9BRT8 395 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms